BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890708

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15733.1 | Symbols: SCRL11 | SCR-like 11 | chr4:8961720-8962...   399    5e-111


> AT4G15733.1 | Symbols: SCRL11 | SCR-like 11 | chr4:8961720-8962119 
FORWARD LENGTH=261
Length=261

 Score =  399 bits (216),  Expect = 5e-111
 Identities = 246/261 (94%), Gaps = 0/261 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAGCCGTTGCGATTTTATTGGTTTCATGTCTTCTTTTCTCCCTTCTCTCAACCAAC  60
            ||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1    ATGAAAGGCATTGCGATGTTATTGGTTTCATGTCTTCTTTTCTCCTTTCTCTCAACCAAC  60

Query  61   CTAGCCAAAGAGTTGGAGTGGTGCCCATCAAAGGACGTGTTCAATGGATCGTGCACAGAC  120
            ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   CTAGCCAAAGAGTTAAAGTGGTGTCCATCAAAGGACGTGTTCAATGGATCGTGCACAGAC  120

Query  121  AGAGGAAGTCCAAGCTACACATGTTTTCTAGATTTGTTGGGATCTAAGAGTGCAAGTGCT  180
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACAGGAAGTCCAAGCTACACATGTTTTCTAGATTTGTTGGGATCTAAGAGTGCAAGTGCT  180

Query  181  ATGCCTAAGAATTGCAAATGTACTCCTCTTCCTCACAACCATCGTCAATGCGACTGTTTT  240
            |||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||
Sbjct  181  ATGCCTAAGAATTGCAAATGCACTCCTCTTCCTCACAATCGTCGTCAATGTGACTGTTTT  240

Query  241  GTCATTTGCGGCAGCAATTAA  261
            ||| |||| | ||||||||||
Sbjct  241  GTCGTTTGTGACAGCAATTAA  261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5