BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890715
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18870.1 | Symbols: | E2F/DP family winged-helix DNA-bindin... 348 4e-95
> AT4G18870.1 | Symbols: | E2F/DP family winged-helix DNA-binding
domain | chr4:10346168-10347228 FORWARD LENGTH=878
Length=878
Score = 348 bits (188), Expect = 4e-95
Identities = 426/535 (80%), Gaps = 40/535 (7%)
Strand=Plus/Plus
Query 19 TCATCAACCTCACTATC---TTTCATCACCACAACATATGTTATGGTCGATGATCTTTCA 75
|||| ||||||| |||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 20 TCATTAACCTCAGTATCATATTTCATCACCACAACGTATGATATGGTCGATGATCTTTCA 79
Query 76 TCATATTCAATAATCTCGTGGAGTCAGAGCGGCAAGAGTTTCATCATTTGGAATC-AGGA 134
| | |||||||||| || ||||| ||||||||||||||||||||||||||||||| || |
Sbjct 80 TTAGATTCAATAATTTCTTGGAGCCAGAGCGGCAAGAGTTTCATCATTTGGAATCCAG-A 138
Query 135 AGAGTTTTCCAGCAATCTCCTACAAAGATTCTTCAAGACCAACAGTTTAGAT---TTATT 191
||| |||| || |||||| || |||||||||| | ||||| | || || || ||
Sbjct 139 AGAATTTTACAACAATCTTCTTCAAAGATTCTGCTT--CCAAC-GCATAAATACCTTTTT 195
Query 192 CTTCTTTAACCTTGAAAT-ACATTGCTTT-AGAAAAATCGACTCTAGAAAATGGGACTTC 249
|| |||| |||| | |||| | ||| ||||||||||||||| |||||||||| |||
Sbjct 196 CT-CTTT--CCTTTTT-TCACATGG-TTTCAGAAAAATCGACTCTGGAAAATGGGAATTC 250
Query 250 GCAAATGATAATTTTGTGCGAGATCAACCTCACCTCATAAACAACATTATAAGCTTCATG 309
|| ||||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||
Sbjct 251 GCGAATGATAATTTTGTGCGAGGTCAACGTCACCTCATAAATAACATTATAAG-TG-ATG 308
Query 310 -A-TAGAAGAAAG-GGATCAGCTA-GACCGAAA-AATGGATAT-GAT-AAAGGCGGAACG 362
| |||| | | | || ||| || || | || |||||| || | | |||| | |||
Sbjct 309 TAATAGA-GCAGGAGGTTCAA-TATGATC-AAGGAATGGA-ATTGTTTAAAG-CAGAAAA 363
Query 363 TTTATTTACCATG-CAAGTTAAAGAAGTAGAGGATCAGTTGCAACCTAATAGGTGTTATC 421
|||||| | | | | ||| ||| ||||| ||||||| |||| |||| ||| ||||||
Sbjct 364 ATTATTTGC-ACGACTAGTGAAAAAAGTACAGGATCAATTGCCACCTCATAACAGTTATC 422
Query 422 CAAACG-AACAACATTC-TTTCCTAACCAAAG-CATATGAGATGGTGGATGATCCCTCGT 478
||| | || ||| ||| ||||| |||||| | |||||||||||||| ||||| || |
Sbjct 423 CAACCTCAA-AAC-TTCCTTTCCCCACCAAAATC-TATGAGATGGTGGACGATCCTTCAT 479
Query 479 CGGATAAAATTGTATCATGGAGCCAAAGCGGCAAGAGTTTCATCATTTGGAATCC 533
||||| ||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 CGGATGCTATTATCTCATGGAGCCAAAGTGGCAAGAGTTTCATCATTTGGAATCC 534
Score = 73.1 bits (39), Expect = 2e-12
Identities = 78/97 (80%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 438 TTTCCTAACCA-AAGCATATGAGATGGTGGATGATCCCTCGTCGGATAAAATTGTATCAT 496
|||| | |||| || | ||||| ||||| ||||||| || | ||| ||| | || |
Sbjct 40 TTTCATCACCACAA-CGTATGATATGGTCGATGATCTTTCATTAGATTCAATAATTTCTT 98
Query 497 GGAGCCAAAGCGGCAAGAGTTTCATCATTTGGAATCC 533
||||||| |||||||||||||||||||||||||||||
Sbjct 99 GGAGCCAGAGCGGCAAGAGTTTCATCATTTGGAATCC 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25719883264
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5