BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890727

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33110.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   409    8e-114
  AT4G33120.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   383    5e-106


> AT4G33110.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr4:15972323-15974613 
REVERSE LENGTH=1324
Length=1324

 Score =  409 bits (221),  Expect = 8e-114
 Identities = 245/257 (95%), Gaps = 0/257 (0%)
 Strand=Plus/Plus

Query  11    TTCAGGAAAATGTTTCGATTGTGGATCATTGGCTCGTAAACGGGACGCATTATGCAAAGA  70
             |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct  894   TTCAAGAAAATGTTTCGATTGTGGATCATTGGCTCGTAAGCGGGACGCATTATGCAAAAA  953

Query  71    CAAGTGAAGAGTGGCTCAAAAGAATGGACAAGGAGATAGTTGCAATAAAAGAGATAATGG  130
             |||||||||||||||| ||||||||||| ||||||||||||||| ||||| | || ||||
Sbjct  954   CAAGTGAAGAGTGGCTAAAAAGAATGGATAAGGAGATAGTTGCAGTAAAAAAAATCATGG  1013

Query  131   AAGTGACATATGGGAAAGAAGAAGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTCA  190
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1014  AAGTGACTTATGGGAAAGAAGAAGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTCA  1073

Query  191   TCGCGGTAGCTGAGCTTTTCGGGTACAACAATGGAGAAGAGTGGATGGTTGCACACTTCC  250
             ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1074  TCGCGGTTGCTGAGCTTTTCGGATACAACAATGGAGAAGAGTGGATGGTTGCACACTTCC  1133

Query  251   TCTTCAAGAAGAAATGA  267
             |||||||||||||||||
Sbjct  1134  TCTTCAAGAAGAAATGA  1150


> AT4G33120.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr4:15975386-15978111 
REVERSE LENGTH=1315
Length=1315

 Score =  383 bits (207),  Expect = 5e-106
 Identities = 237/252 (94%), Gaps = 0/252 (0%)
 Strand=Plus/Plus

Query  16    GAAAATGTTTCGATTGTGGATCATTGGCTCGTAAACGGGACGCATTATGCAAAGACAAGT  75
             ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  873   GAAAATGTTTCGATTATGGATCATTGGCTCGTTAACGGGACGCATTATGCAAAGACAAGT  932

Query  76    GAAGAGTGGCTCAAAAGAATGGACAAGGAGATAGTTGCAATAAAAGAGATAATGGAAGTG  135
             ||||||||||| ||| ||||||| ||||||||||||||  ||||||||||||||||||||
Sbjct  933   GAAGAGTGGCTGAAAGGAATGGATAAGGAGATAGTTGCCGTAAAAGAGATAATGGAAGTG  992

Query  136   ACATATGGGAAAGAAGAAGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTCATCGCG  195
             || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  993   ACTTATGGGAAAGAAGAAGCAGTGAAGTGGACGGTTTACTGGAGAACCTTCTTCATCGCG  1052

Query  196   GTAGCTGAGCTTTTCGGGTACAACAATGGAGAAGAGTGGATGGTTGCACACTTCCTCTTC  255
              | |||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||
Sbjct  1053  CTTGCTGAGCTTTTCGCATACAACAATGGAGACGAGTGGATGATTGCACACTTCCTCTTC  1112

Query  256   AAGAAGAAATGA  267
             ||||||||||||
Sbjct  1113  AAGAAGAAATGA  1124



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5