BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890749
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15450.1 | Symbols: | Senescence/dehydration-associated pro... 1653 0.0
> AT4G15450.1 | Symbols: | Senescence/dehydration-associated protein-related
| chr4:8839414-8841276 FORWARD LENGTH=1283
Length=1283
Score = 1653 bits (895), Expect = 0.0
Identities = 1067/1147 (93%), Gaps = 23/1147 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTTTTTCAGATCAAAGACTTCAAGAACCGAAACACAACAACCATCTTCGTACGGA 60
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||
Sbjct 24 ATGAGTTTTTTCAGATCAAAGACTTCAAAAACTGAAACACAACAACCATCATCGTATGGA 83
Query 61 CAACAACAAGACGCCATGTACTCATCTTACCAAACCGTGAGTGACGAAGTGTTATTACAG 120
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 84 CAACAACAAGACGCTATGTACTCATCTTACGGAACCGTGAGTGACGAAGTGTTATTACAG 143
Query 121 ATTCATGGATGCAGAGCTCATCTCATCAACGGATCCGAAGCTGTGGAGCTCGCCGCCGGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 144 ATTCATGGATGCAGAGCTCATCTCATCAACGGATCCGAAGCTGTGGAGCTAGCCGCCGGA 203
Query 181 GACTTCGAGCTTGTACAAGTCTTAGACAACAACGTAGCCTTAGCTATGGTCGTGAGGATC 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 204 GACTTCGAGCTTGTACAAGTCTTAGACAGCAACGTAGCCTTAGCTATGGTCGTGAGGATC 263
Query 241 GGACGTGACTTACAATGGCCGGTGATTAAAGACGAGCCAGTGGTGAAACTTGACTCTCGT 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GGAAATGACTTACAATGGCCGGTGATTAAAGACGAGCCAGTGGTGAAACTTGACTCTCGT 323
Query 301 GACTACCTCTTCACGTTGCCGGTGAAAGACGGAGAGCCACTTAGCTACGGTGTCACGTTT 360
||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct 324 GACTACCTCTTCACGTTGCCGGTTAAAGATGGAGAGCCACTTAGTTACGGCATCACGTTT 383
Query 361 TTCCCCATCGATGAAAACGACGTCGTTTTTGTGAATAGTATTGAGTTGTTAG-CTGATTT 419
||||| || |||||||| ||| ||||||||||||||||||| |||||| ||| | |||||
Sbjct 384 TTCCCTATTGATGAAAATGACATCGTTTTTGTGAATAGTATCGAGTTGCTAGAC-GATTT 442
Query 420 CTTGAGAGAGAA---------Ctctt-gt-t---tc-tcttcttcg------tcttcgtc 458
|||||||||||| ||||| || | || ||||||||| ||||||||
Sbjct 443 CTTGAGAGAGAATTCTTGTTTCTCTTCGTCTCCGTCTTCTTCTTCGTCTTCTTCTTCGTC 502
Query 459 ttcttcttTGAGTGTGAACAATGGAATTGATTGGAAAGAGTTTGCGCCTAGGATTGAAGA 518
|||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 503 TTCTTCTTCGAGTGTTAACAATGGAATTGATTGGAAAGAGTTTGCGCCTAAGATTGAAGA 562
Query 519 TTATAACAATGTTGTGGCTAAAGCTATTGCGGGAGGTACCGGGCATATTATTAGAGGGAT 578
||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 563 TTATAACAATGTTGTAGCTAAAGCTATTGCAGGAGGTACAGGGCATATCATTAGAGGGAT 622
Query 579 GTTTAAATGCAGTAATGCTTATACTAATCAGGTTCACAAAGGAGGTGAGATTATGATTAC 638
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 623 GTTTAAATGCAGTAATGCTTACACTAATCAGGTTCATAAAGGAGGTGAAATTATGATTAC 682
Query 639 AAAGGCTGAGAAGAAGAGTGGTGCCTCGTCAAAAAGAAGTGCAAGCACAAACAAGAATCA 698
||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 683 GAAGGCTGAGAAAAAGAATGGTGCCTCGTCAAAAAGAAATGCAACCACAAACAAGAATCA 742
Query 699 AATCAATAAGAACCTTCAACGAGTAAGGAAATTGTCGAGAGCGACCGAGAAATTGAGCAA 758
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 743 AATCAACAAGAACCTTCAACGAGTAAGGAAATTGTCTAGGGCGACGGAGAAATTGAGCAA 802
Query 759 GACAATGCTGAATGGTGTGGGAGTTGTGAGTGGCTCGGTGATGGGTCCAGTTGTAAAGTC 818
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 803 GACAATGTTGAATGGTGTGGGAGTGGTGAGTGGCTCGGTGATGGGTCCAGTTGTAAAGTC 862
Query 819 CAAGCCAGGGAAAGCTTTTTTCTCAATGGTTCCAGGGGAGGTTCTATTGGCTTCACTTGA 878
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GAAGCCAGGGAAAGCTTTTTTCTCAATGGTTCCAGGGGAGGTTCTATTGGCTTCACTTGA 922
Query 879 TGCACTTAATAAATTACTAGACGCTGCTGAAGCTGCAGAAAGACAAACTCTTTCTGCTAC 938
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 923 TGCTCTTAATAAATTACTAGACGCTGCTGAAGCCGCAGAGAGACAAACTCTTTCTGCTAC 982
Query 939 GTCCAAAGCTACTACCAGAATGGTTAGTGAGAGGTTGGGTGAGAGCGCGGGGGAAGCTAC 998
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 983 GTCCAAAGCTACTACAAGAATGGTTAGTGAGAGGTTAGGTGAGAGCGCGGGAGAAGCTAC 1042
Query 999 GAAAGATGTGCTAGGCACGGTTGGCCACGCAGCCGGCACTGCGTGGAATGTCTTCAATAT 1058
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1043 GAAAGATGTACTAGGCACGGTTGGGCACGCAGCCGGCACTGCGTGGAACGTCTTCAATAT 1102
Query 1059 CCGCAAGGCTTTCTCTCCTTCCTCTTCACTCACATCAGGGATACTCAAAAACGCTTCACG 1118
|||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 1103 CCGCAAAGCTTTCTCTCCTTCCTCTTCAGTCACATCGGGGATCCTCAAAAACGCTTCACG 1162
Query 1119 AAAGTGA 1125
|||||||
Sbjct 1163 AAAGTGA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5