BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890769
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15290.1 | Symbols: ATCSLB05, CSLB05, ATCSLB5 | Cellulose sy... 418 3e-116
AT4G15320.1 | Symbols: ATCSLB06, CSLB06, ATCSLB6 | cellulose sy... 276 2e-73
AT2G32620.1 | Symbols: ATCSLB02, CSLB02, ATCSLB2 | cellulose sy... 241 8e-63
> AT4G15290.1 | Symbols: ATCSLB05, CSLB05, ATCSLB5 | Cellulose
synthase family protein | chr4:8721487-8726669 REVERSE LENGTH=2550
Length=2550
Score = 418 bits (226), Expect = 3e-116
Identities = 300/336 (89%), Gaps = 4/336 (1%)
Strand=Plus/Plus
Query 330 TAAACCAACTAAAGGAGAAGATGATGGTCCAAAATCAGACTT-GCGTAATTTTGAATTTG 388
||||||| || ||||||||||||||| |||||||| | | || | |||| ||||||||||
Sbjct 2011 TAAACCATCTCAAGGAGAAGATGATGTTCCAAAATTAAATTTAG-GTAAATTTGAATTTG 2069
Query 389 ATAGCTCGCATCATTTCATTCCCGGCACATTTATTTTGTTCGTGAATCTAGCCGCTCTAG 448
|||||||| || |||||| ||||||||||||||| |||| |||||||| ||||||||||
Sbjct 2070 ATAGCTCGGGTCTTTTCATACCCGGCACATTTATTATGTTGGTGAATCTTGCCGCTCTAG 2129
Query 449 CTAttttttttGTGGGTCAACAACGGTCGAGTTGTAGTCACGGAGGAGGTGGTTCGGGTT 508
|| || ||| || ||| ||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 2130 CTGGTTATTTGGTTCGTCTACAACGGTCAAGTTGTAGTCATGGAGGAGGTGGCTCGGGTT 2189
Query 509 TGGCAGAGGCTTGTGGATGTATTTTGGTGGTTACGTTGTTCCTTCCATTTCTAAAGGGTT 568
|||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 2190 TGGCAGAGGCTTGTGGATGTATCTTGGTGGTTATGTTATTCCTTCCATTTCTAAAGGGTT 2249
Query 569 TGTTTGAGCATGGAAAATATGGCATCCCATTGTGTACTCTCTCTAAAGCTGCCTTTTTGA 628
|||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||
Sbjct 2250 TGTTTGAGCATGGAAAATATAGCATCCCATTGTCTACTCTTTCTAAAGCTGCCTTTTTGA 2309
Query 629 CAGTTTTATTTGT-TGTTTTCTCTTTGGGAAAATAG 663
||||||||||||| | |||||| | |||||||||||
Sbjct 2310 CAGTTTTATTTGTAT-TTTTCTGTGTGGGAAAATAG 2344
Score = 346 bits (187), Expect = 2e-94
Identities = 235/259 (91%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 18 GGATCCACCTGCGTTTGTTGGATCTACGCCGTCATTAGGACTAGAGGCTATATTCCAGCA 77
|||||||||||||||| ||||||| |||||| | |||||| ||||||||||| |||||||
Sbjct 1507 GGATCCACCTGCGTTTATTGGATCCACGCCGACGTTAGGATTAGAGGCTATAGTCCAGCA 1566
Query 78 GCGGCGATGGTCGACCGGAGAAATTGAAGTCCTTTTTAACAAACAAAGTCCGTTGATTGG 137
|||||||||| |||| |||| ||| ||||||||||||||||||||||| ||||| || ||
Sbjct 1567 GCGGCGATGGGCGACGGGAGCAATCGAAGTCCTTTTTAACAAACAAAGCCCGTTCATGGG 1626
Query 138 AATGTTCCGCCGAAAAATAAAATTCCGTCAACGATTAGCTTATTTTTGGGCACTCATGTG 197
|||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1627 AATGTTCCACGGGAAAATAAAATTCCGTCAACGATTAGCTTATTTTTGGGCCCTCATGTG 1686
Query 198 TATAAGGTCAATCCCTGAGCTCGTTTATTGTCTCTTGCCTGCTTATTCCCTACTCCACAA 257
| ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |
Sbjct 1687 TTTAAGGTCAATCCCTGAGCTTATTTATTGCCTCTTGCCTGCTTATTGCCTACTCCACGA 1746
Query 258 CTCTGCCTTATTTCCCAAG 276
||||||||| |||||||||
Sbjct 1747 CTCTGCCTTGTTTCCCAAG 1765
> AT4G15320.1 | Symbols: ATCSLB06, CSLB06, ATCSLB6 | cellulose
synthase-like B6 | chr4:8742639-8747981 REVERSE LENGTH=2487
Length=2487
Score = 276 bits (149), Expect = 2e-73
Identities = 223/259 (86%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 18 GGATCCACCTGCGTTTGTTGGATCTACGCCGTCATTAGGACTAGAGGCTATATTCCAGCA 77
||| || || |||||| | ||||| || ||||| |||||| |||||| ||| |||| ||
Sbjct 1704 GGACCCTCCCGCGTTTCTAGGATCAACTCCGTCGGTAGGACCAGAGGCGATAGTCCAACA 1763
Query 78 GCGGCGATGGTCGACCGGAGAAATTGAAGTCCTTTTTAACAAACAAAGTCCGTTGATTGG 137
||||||||| | || ||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1764 CCGGCGATGGGCAACGGGATCGATCGAAGTCCTTTTTAACAAACAAAGTCCGTTGATCGG 1823
Query 138 AATGTTCCGCCGAAAAATAAAATTCCGTCAACGATTAGCTTATTTTTGGGCACTCATGTG 197
| ||||| || |||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 1824 --T-TTCCGTCGGAAAATAAAATTCCGACAAAGATTAGCTTATTTTTGGGTTCTCATGTG 1880
Query 198 TATAAGGTCAATCCCTGAGCTCGTTTATTGTCTCTTGCCTGCTTATTCCCTACTCCACAA 257
|||||||||||||||||||||||| || ||||||||||||||||||| ||||||| ||||
Sbjct 1881 TATAAGGTCAATCCCTGAGCTCGTGTACTGTCTCTTGCCTGCTTATTGCCTACTCAACAA 1940
Query 258 CTCTGCCTTATTTCCCAAG 276
||||||||| |||||||||
Sbjct 1941 CTCTGCCTTGTTTCCCAAG 1959
> AT2G32620.1 | Symbols: ATCSLB02, CSLB02, ATCSLB2 | cellulose
synthase-like B | chr2:13840744-13844324 FORWARD LENGTH=2274
Length=2274
Score = 241 bits (130), Expect = 8e-63
Identities = 218/261 (84%), Gaps = 4/261 (2%)
Strand=Plus/Plus
Query 18 GGATCCACCTGCGTTTGTTGGATCTACGCCGTCATTAGGACTAGAGGCTAT-ATTCCAGC 76
|||||||||||||||| ||||||||| |||| | |||||| ||||| || | ||||||
Sbjct 1440 GGATCCACCTGCGTTTCTTGGATCTATGCCGCCGGGAGGACTGGAGGCAATGA-TCCAGC 1498
Query 77 AGCGGCGATGGTCGACCGGAGAAATTGAAGTCCTTTTTAACAAACAAAGTCCGTTGATTG 136
| ||||||||| | || ||| || ||||| ||||| |||||||||||||||||| | |
Sbjct 1499 AACGGCGATGGGCAACAGGATCGATCGAAGTTCTTTTCAACAAACAAAGTCCGTTGCTAG 1558
Query 137 GAATGTTCCGCCGAAAAATAAAATTCCGTCAACGATTAGCTTATTTTTG-GGCACTCATG 195
|| |||| || ||||| ||| ||| || || ||| |||||||| |||| | | |||
Sbjct 1559 GATTGTTTTGCAGAAAATTAAGATTTCGACAGCGAGTAGCTTATCTTTGCGTTTC-CATT 1617
Query 196 TGTATAAGGTCAATCCCTGAGCTCGTTTATTGTCTCTTGCCTGCTTATTCCCTACTCCAC 255
||| |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct 1618 TGTGTAAGGTCAATCCCTGAGCTCATTTATTGTCTCTTGCCTGCATATTGCCTACTCCAC 1677
Query 256 AACTCTGCCTTATTTCCCAAG 276
|||||||||||||||||||||
Sbjct 1678 AACTCTGCCTTATTTCCCAAG 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5