BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg890784 Length=2349 Score E Sequences producing significant alignments: (Bits) Value AT4G15200.1 | Symbols: AFH3, FH3 | formin 3 | chr4:8662992-8665... 2713 0.0 > AT4G15200.1 | Symbols: AFH3, FH3 | formin 3 | chr4:8662992-8665759 REVERSE LENGTH=2296 Length=2296 Score = 2713 bits (1469), Expect = 0.0 Identities = 1694/1801 (94%), Gaps = 21/1801 (1%) Strand=Plus/Plus Query 1 ATGGGGAGATTGAGATTAGCGTTTTTGGCGGTCTCTCTCGTTGTTTTCGTTTGTGTTTCC 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGGGAGATTGAGATTAGCGTTTTTGGCGATCTCTCTCGTTGTTTTCGTTTGTGTTTCC 60 Query 61 GAGGAGATTTTCTCTCGAGACGGTGC-AAATCTCTTTCGATTCTCCGTATAT--CGAAAC 117 ||||||||||||||||||| |||| | ||||||||| |||||||| || ||| || || Sbjct 61 GAGGAGATTTTCTCTCGAGGCGGT-CTAAATCTCTTACGATTCTCTGTTTATGGCG-AA- 117 Query 118 TCTATCGCAGAGCAAACATGGATTCATCAAAATCCGAGAAGGAAGCTGATCAGTTATCCA 177 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GATGTGGCAGAGCAAACATGGATTCATCAAAATCCGAGAAGGAAGCTGATCAGTTATCCA 177 Query 178 AAAAAGTTTAGTGTCTCTGCTCCAAATTTAGCTTCCGGTCCTGCACCGGGTTTCGCGCCT 237 |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 178 AAAAAGTTTAGTGTCTCTGCTCCAAATTTAGCTTTCGGTCCTGCACCGAGTTTCGCGCCA 237 Query 238 GGACCTGGGCCAAGTTTTGCGCCAGGTCCTGCACCGAATCCTCGTAGTTATGATCTCGT- 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 238 GGACCTGGGCCAAGTTTTGCGCCAGGTCCTGCACCGAATCCTCGTAGTTATGAT-TGGTT 296 Query 297 AGCACCTGCAAGTTCTCCAAATGAACCTCCAGCTGAGACACCGGATGAATCGAGTCCCGG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 297 AGCACCTGCAAGTTCTCCAAATGAACCTCCAGCTGAGACACCGGATGAATCGAGTCCCAG 356 Query 357 TCCAAGTGAGGAGAAACCGAGTGTTGTTGCTCCTAGTCAAAGTGTTCCGGGTCCTCCTC- 415 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CCCAAGTGAGGAGACACCGAGTGTTGTTGCTCCTAGTCAAAGTGTTCCGGGTCCTCCTCG 416 Query 416 -C-TCCACCACGA-G--AGAAGAAGGATGATGTCTTGATGAAACTTATCATAGCTGTTGC 470 | ||| |||| | | |||||||||||||| ||||||||||||||||||| || ||||| Sbjct 417 TCCTCCTCCACAACGGGAGAAGAAGGATGATATCTTGATGAAACTTATCATCGCGGTTGC 476 Query 471 TTCAACCGCTGTTTTAACGTTTGTTCTTGTTGCATTGATGTTCTTGTGTTGTTTCAAACG 530 ||| |||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 477 TTCTACCGCTGTCTTAACGTTTGTTTTTGTTGCATTGATGTTCTTGTGTTGCTTCAAACG 536 Query 531 CAATCGCAACAACGCGGTTGGGCCTAGAGATGGACCAAGAGATGAAGGACCACTTCTACG 590 |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 537 CAATTGCAACAACGCGGTTGGTTCTAGAGATGGACCTAGAGATGAAGGACCACTTCTACG 596 Query 591 TTTATCAACTGGATCTACTGAGAACTCGCCCACCGTCGCAAGCACGAGCCGGAAAATGTT 650 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 597 TTTATCAACTGGATCTACTGAGAACTCTCCCACCGTCGCAAGCACGAGCCGGAAAATGTT 656 Query 651 TAGTGCTACTAGTTCGAAAAAGAGGTCGTTTCTTTCTAGAGTATCTTTTAAA-AGAAATG 709 ||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 657 TAGTGTTGCTAGTTCGAAAAAGAGGTCGTTTCTTTCTAGAGTATCTTT-AAAGAGAAATG 715 Query 710 GTCATGAATTTTCAACGGCTGAATCTTCATCGGC---TGGACTTCCTCCATTGAAGCTTC 766 ||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||| Sbjct 716 GTCATGAGTTTTCAACGGCTGAATCGTCATCGGCAGCTGGACTTCCTCCGTTGAAGCTTC 775 Query 767 CCCCGGGAAGATCAGCGGctcctcctcctcctgctcctgctccacctccacagccaccgc 826 |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| | Sbjct 776 CCCCGGGAAGATCAGCACCTCCTCCACCTCCTGCTGCTGCTCCACCTCCACAGCCACCTC 835 Query 827 ctcctcctccacctaaaccacaacctcctccaccacctaaaattgctcgtcctccacctg 886 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 836 CTCCTCCTCCTCCTAAACCACAACCTCCTCCACCGCCTAAAATTGCTCGTCCTCCACCTG 895 Query 887 caccaccaAAAGGTGTGGCTCCAAAACGTCAAGGACATACTTCCTCTGGAGATGCATCTG 946 |||| || ||||||| ||||||||||||||||||| | |||||||||||||||||||||| Sbjct 896 CACCTCCTAAAGGTGCGGCTCCAAAACGTCAAGGAAACACTTCCTCTGGAGATGCATCTG 955 Query 947 ATGTTGATTCTGAGACTGGAGCTCCAAAAACAAAACTAAAGCCGTTCTTCTGGGATAAAA 1006 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 956 ATGTTGATTCTGAGACTGGAGCTCCAAAAACAAAACTAAAGCCTTTCTTTTGGGATAAAA 1015 Query 1007 TGGCCAACCCTGATCAGAAAATGGTTTGGCATGAGATTAGCGCCGGTTCATTCCAGTTCA 1066 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 TGGCTAACCCTGATCAAAAAATGGTTTGGCATGAGATTAGCGCCGGTTCATTCCAGTTCA 1075 Query 1067 ACGAAGAGGCGATGGAGACGCTTTTCGGTTACAATGATGGTAACAAAAACAAGAACGGTC 1126 ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||| Sbjct 1076 ACGAAGAGGCGATGGAGTCGCTTTTCGGTTACAACGATGGGAACAAAAACAAGAATGGTC 1135 Query 1127 AGAGGAGTACCGATTCGTCGTCACGCGAATCTCCTGTTCAATATATACAGATAATTGACA 1186 ||| |||||| |||||||||| ||||||||||||| | |||||||||||||| ||||||| Sbjct 1136 AGAAGAGTACTGATTCGTCGTTACGCGAATCTCCTCTACAATATATACAGATCATTGACA 1195 Query 1187 CTAGGAAAGCTCAAAACTTATCTATTCTTCTTCGAGCTTTGAATGTAACAACAGAAGAAG 1246 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1196 CTAGGAAAGCTCAAAACTTATCTATTCTTCTTCGAGCTCTGAATGTAACAACAGAGGAAG 1255 Query 1247 TCGTCGATGCAATCAAAGAAGGTAATGAGCTCCCAGTGGAGCTTCTACAAACATTGCTGA 1306 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 TCGTTGATGCCATCAAAGAAGGTAATGAGCTCCCAGTGGAGCTTCTACAAACATTGCTGA 1315 Query 1307 AGATGGCTCCAACATCAGAAGAAGAACTCAAACTTAGACTATACTCGGGCGATCTTCACT 1366 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1316 AGATGGCTCCAACTTCAGAAGAAGAACTCAAACTTAGACTATACTCGGGAGATCTTCACT 1375 Query 1367 TACTTGGCCCCGCGGAACGATTCTTGAAAATTCTTGTTGATATACCTTTTGCATTTAAAC 1426 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1376 TACTTGGCCCCGCGGAGCGGTTCTTGAAAATTCTTGTTGATATACCTTTTGCATTTAAAC 1435 Query 1427 GTATAGAGTCACTTCTATTCATGATCTCACTTCAAGAAGAAGTCTCTGGCCTCAAAGAAG 1486 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1436 GTATAGAGTCACTTCTATTTATGATCTCACTTCAAGAAGAAGTCTCTGGACTCAAAGAAG 1495 Query 1487 CTCTCGCAACTCTCGAGGTGGCTTGCAAGAAACTTAGAAACAGCAGACTGTTTCTAAAAC 1546 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1496 CTCTCGGAACTCTCGAGGTGGCTTGCAAGAAACTTAGAAACAGCAGACTGTTTTTAAAAC 1555 Query 1547 TACTAGAGGCAGTTCTCAAGACAGGAAACCGAATGAATGTAGGAACTTTCCGCGGTGATG 1606 ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 1556 TACTAGAGGCAGTTCTCAAGACAGGGAATCGAATGAATGTTGGAACTTTCCGCGGTGATG 1615 Query 1607 CGCAGGCTTTCAAACTCGATACTCTTTTAAAACTCTCTGACGTCAAGGGAACTGATGGCA 1666 ||||||||||||| |||||||||||||| || ||||||||||| || ||||||||||||| Sbjct 1616 CGCAGGCTTTCAAGCTCGATACTCTTTTGAAGCTCTCTGACGTGAAAGGAACTGATGGCA 1675 Query 1667 AAACTACACTTTTACATTTCGTTGTTCTCGAGATCATTCGTTCTGAAGGCGTTCGTGCTC 1726 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1676 AAACTACACTTTTACATTTTGTTGTTCTTGAGATCATTCGTTCTGAAGGCGTTCGTGCTC 1735 Query 1727 TTCGCCTTCAGAGCCGAAGCTTCTCAAGTGTTAAAACAGATGATTCAGTA-GCGGATTCT 1785 |||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| Sbjct 1736 TTCGCCTTCAGAGCCGAAGCTTCTCAAGCGTTAAAACCGATGATTCAA-ACGCGGATTCT 1794 Query 1786 A 1786 | Sbjct 1795 A 1795 Score = 708 bits (383), Expect = 0.0 Identities = 463/502 (92%), Gaps = 4/502 (1%) Strand=Plus/Plus Query 1850 AGCTTGAAGATGTCAAGAGAGCAGCCATCATAGACGCTGATGGATTGGCTGCAACATTGG 1909 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1796 AGCTTGAAGATGTCAAGAGAGCAGCCATCATAGACGCTGATGGTTTGGCTGCAACATTGG 1855 Query 1910 CAAATCTAAGTGGCTCGCTTACGAATGCAAGGGAGTTTTTGAAAACGATGGACGAAGAGA 1969 | ||| |||| || || ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 1856 CGAATATAAGCGGTTCACTTACGAATGCGAGGGAGTTTTTGAAAACAATGGATGAAGAGA 1915 Query 1970 GCGATTTCGAACGAGCATTAGCTGGATTTATAGAACGTGCAGATGCTGACATCAAATGGT 2029 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1916 GCGATTTCGAACGAGCATTAGCTGGATTTATAGAACGTGCAGATGCTGATTTTAAATGGT 1975 Query 2030 TGAAAGAAGAAGAAGAGAGAATAATGGTGTTGGTGAAAAGCTCTGCTGATTATTTCCATG 2089 |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1976 TGAAGGAAGAAGAAGAGAGAATCATGGTTTTGGTGAAAAGCTCTGCTGATTATTTCCATG 2035 Query 2090 GGAAATCTGCGAAAAACGAAGGGCTACGTTTGTTCGCTATAGTGCGCGATTTCTTGATTA 2149 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 2036 GGAAGTCTGCGAAAAACGAAGGACTACGTTTGTTCGCTATAGTGCGCGATTTCTTGATAA 2095 Query 2150 TGTTGGAGAAAGTTTGCAGAGAAGTTAAGGAAACAACGAAGACGAAGAACCATTCGGGTA 2209 |||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |||| Sbjct 2096 TGTTGGAGAAAGTTTGCAGAGAAGTTAAGGAAACTACAAAGACGACGAACCATTCAGGTA 2155 Query 2210 AGAAGGAAA-CTGATACGATGTCTTCAGACAGTAATCAACCGTCTCCGGACATTC-GACA 2267 ||||||||| | || | || |||| |||||||||||||||||||||||| ||| |||| Sbjct 2156 AGAAGGAAAGC-GAAATGACAACTTCGGACAGTAATCAACCGTCTCCGGAC-TTCCGACA 2213 Query 2268 ACGTTTATTTCCAGCGATTGCTGAACGGAGAATCGACAGTTCGGATGATTCAGACGATGA 2327 |||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 2214 ACGTTTGTTTCCAGCGATTGCTGAACGAAGAATGGATAGTTCGGATGATTCAGACGATGA 2273 Query 2328 GGAAGATAGTTCACCTTCTTAG 2349 || |||||||||||||| ||| Sbjct 2274 AGAGGATAGTTCACCTTCGTAG 2295 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116615866035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5