BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890784
Length=2349
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15200.1 | Symbols: AFH3, FH3 | formin 3 | chr4:8662992-8665... 2713 0.0
> AT4G15200.1 | Symbols: AFH3, FH3 | formin 3 | chr4:8662992-8665759
REVERSE LENGTH=2296
Length=2296
Score = 2713 bits (1469), Expect = 0.0
Identities = 1694/1801 (94%), Gaps = 21/1801 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGATTGAGATTAGCGTTTTTGGCGGTCTCTCTCGTTGTTTTCGTTTGTGTTTCC 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGATTGAGATTAGCGTTTTTGGCGATCTCTCTCGTTGTTTTCGTTTGTGTTTCC 60
Query 61 GAGGAGATTTTCTCTCGAGACGGTGC-AAATCTCTTTCGATTCTCCGTATAT--CGAAAC 117
||||||||||||||||||| |||| | ||||||||| |||||||| || ||| || ||
Sbjct 61 GAGGAGATTTTCTCTCGAGGCGGT-CTAAATCTCTTACGATTCTCTGTTTATGGCG-AA- 117
Query 118 TCTATCGCAGAGCAAACATGGATTCATCAAAATCCGAGAAGGAAGCTGATCAGTTATCCA 177
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GATGTGGCAGAGCAAACATGGATTCATCAAAATCCGAGAAGGAAGCTGATCAGTTATCCA 177
Query 178 AAAAAGTTTAGTGTCTCTGCTCCAAATTTAGCTTCCGGTCCTGCACCGGGTTTCGCGCCT 237
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 178 AAAAAGTTTAGTGTCTCTGCTCCAAATTTAGCTTTCGGTCCTGCACCGAGTTTCGCGCCA 237
Query 238 GGACCTGGGCCAAGTTTTGCGCCAGGTCCTGCACCGAATCCTCGTAGTTATGATCTCGT- 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 238 GGACCTGGGCCAAGTTTTGCGCCAGGTCCTGCACCGAATCCTCGTAGTTATGAT-TGGTT 296
Query 297 AGCACCTGCAAGTTCTCCAAATGAACCTCCAGCTGAGACACCGGATGAATCGAGTCCCGG 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 297 AGCACCTGCAAGTTCTCCAAATGAACCTCCAGCTGAGACACCGGATGAATCGAGTCCCAG 356
Query 357 TCCAAGTGAGGAGAAACCGAGTGTTGTTGCTCCTAGTCAAAGTGTTCCGGGTCCTCCTC- 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCCAAGTGAGGAGACACCGAGTGTTGTTGCTCCTAGTCAAAGTGTTCCGGGTCCTCCTCG 416
Query 416 -C-TCCACCACGA-G--AGAAGAAGGATGATGTCTTGATGAAACTTATCATAGCTGTTGC 470
| ||| |||| | | |||||||||||||| ||||||||||||||||||| || |||||
Sbjct 417 TCCTCCTCCACAACGGGAGAAGAAGGATGATATCTTGATGAAACTTATCATCGCGGTTGC 476
Query 471 TTCAACCGCTGTTTTAACGTTTGTTCTTGTTGCATTGATGTTCTTGTGTTGTTTCAAACG 530
||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 477 TTCTACCGCTGTCTTAACGTTTGTTTTTGTTGCATTGATGTTCTTGTGTTGCTTCAAACG 536
Query 531 CAATCGCAACAACGCGGTTGGGCCTAGAGATGGACCAAGAGATGAAGGACCACTTCTACG 590
|||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 537 CAATTGCAACAACGCGGTTGGTTCTAGAGATGGACCTAGAGATGAAGGACCACTTCTACG 596
Query 591 TTTATCAACTGGATCTACTGAGAACTCGCCCACCGTCGCAAGCACGAGCCGGAAAATGTT 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 597 TTTATCAACTGGATCTACTGAGAACTCTCCCACCGTCGCAAGCACGAGCCGGAAAATGTT 656
Query 651 TAGTGCTACTAGTTCGAAAAAGAGGTCGTTTCTTTCTAGAGTATCTTTTAAA-AGAAATG 709
||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 657 TAGTGTTGCTAGTTCGAAAAAGAGGTCGTTTCTTTCTAGAGTATCTTT-AAAGAGAAATG 715
Query 710 GTCATGAATTTTCAACGGCTGAATCTTCATCGGC---TGGACTTCCTCCATTGAAGCTTC 766
||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 716 GTCATGAGTTTTCAACGGCTGAATCGTCATCGGCAGCTGGACTTCCTCCGTTGAAGCTTC 775
Query 767 CCCCGGGAAGATCAGCGGctcctcctcctcctgctcctgctccacctccacagccaccgc 826
|||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 776 CCCCGGGAAGATCAGCACCTCCTCCACCTCCTGCTGCTGCTCCACCTCCACAGCCACCTC 835
Query 827 ctcctcctccacctaaaccacaacctcctccaccacctaaaattgctcgtcctccacctg 886
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 836 CTCCTCCTCCTCCTAAACCACAACCTCCTCCACCGCCTAAAATTGCTCGTCCTCCACCTG 895
Query 887 caccaccaAAAGGTGTGGCTCCAAAACGTCAAGGACATACTTCCTCTGGAGATGCATCTG 946
|||| || ||||||| ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 896 CACCTCCTAAAGGTGCGGCTCCAAAACGTCAAGGAAACACTTCCTCTGGAGATGCATCTG 955
Query 947 ATGTTGATTCTGAGACTGGAGCTCCAAAAACAAAACTAAAGCCGTTCTTCTGGGATAAAA 1006
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 956 ATGTTGATTCTGAGACTGGAGCTCCAAAAACAAAACTAAAGCCTTTCTTTTGGGATAAAA 1015
Query 1007 TGGCCAACCCTGATCAGAAAATGGTTTGGCATGAGATTAGCGCCGGTTCATTCCAGTTCA 1066
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGGCTAACCCTGATCAAAAAATGGTTTGGCATGAGATTAGCGCCGGTTCATTCCAGTTCA 1075
Query 1067 ACGAAGAGGCGATGGAGACGCTTTTCGGTTACAATGATGGTAACAAAAACAAGAACGGTC 1126
||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1076 ACGAAGAGGCGATGGAGTCGCTTTTCGGTTACAACGATGGGAACAAAAACAAGAATGGTC 1135
Query 1127 AGAGGAGTACCGATTCGTCGTCACGCGAATCTCCTGTTCAATATATACAGATAATTGACA 1186
||| |||||| |||||||||| ||||||||||||| | |||||||||||||| |||||||
Sbjct 1136 AGAAGAGTACTGATTCGTCGTTACGCGAATCTCCTCTACAATATATACAGATCATTGACA 1195
Query 1187 CTAGGAAAGCTCAAAACTTATCTATTCTTCTTCGAGCTTTGAATGTAACAACAGAAGAAG 1246
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1196 CTAGGAAAGCTCAAAACTTATCTATTCTTCTTCGAGCTCTGAATGTAACAACAGAGGAAG 1255
Query 1247 TCGTCGATGCAATCAAAGAAGGTAATGAGCTCCCAGTGGAGCTTCTACAAACATTGCTGA 1306
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCGTTGATGCCATCAAAGAAGGTAATGAGCTCCCAGTGGAGCTTCTACAAACATTGCTGA 1315
Query 1307 AGATGGCTCCAACATCAGAAGAAGAACTCAAACTTAGACTATACTCGGGCGATCTTCACT 1366
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1316 AGATGGCTCCAACTTCAGAAGAAGAACTCAAACTTAGACTATACTCGGGAGATCTTCACT 1375
Query 1367 TACTTGGCCCCGCGGAACGATTCTTGAAAATTCTTGTTGATATACCTTTTGCATTTAAAC 1426
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TACTTGGCCCCGCGGAGCGGTTCTTGAAAATTCTTGTTGATATACCTTTTGCATTTAAAC 1435
Query 1427 GTATAGAGTCACTTCTATTCATGATCTCACTTCAAGAAGAAGTCTCTGGCCTCAAAGAAG 1486
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1436 GTATAGAGTCACTTCTATTTATGATCTCACTTCAAGAAGAAGTCTCTGGACTCAAAGAAG 1495
Query 1487 CTCTCGCAACTCTCGAGGTGGCTTGCAAGAAACTTAGAAACAGCAGACTGTTTCTAAAAC 1546
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1496 CTCTCGGAACTCTCGAGGTGGCTTGCAAGAAACTTAGAAACAGCAGACTGTTTTTAAAAC 1555
Query 1547 TACTAGAGGCAGTTCTCAAGACAGGAAACCGAATGAATGTAGGAACTTTCCGCGGTGATG 1606
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1556 TACTAGAGGCAGTTCTCAAGACAGGGAATCGAATGAATGTTGGAACTTTCCGCGGTGATG 1615
Query 1607 CGCAGGCTTTCAAACTCGATACTCTTTTAAAACTCTCTGACGTCAAGGGAACTGATGGCA 1666
||||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||
Sbjct 1616 CGCAGGCTTTCAAGCTCGATACTCTTTTGAAGCTCTCTGACGTGAAAGGAACTGATGGCA 1675
Query 1667 AAACTACACTTTTACATTTCGTTGTTCTCGAGATCATTCGTTCTGAAGGCGTTCGTGCTC 1726
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1676 AAACTACACTTTTACATTTTGTTGTTCTTGAGATCATTCGTTCTGAAGGCGTTCGTGCTC 1735
Query 1727 TTCGCCTTCAGAGCCGAAGCTTCTCAAGTGTTAAAACAGATGATTCAGTA-GCGGATTCT 1785
|||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||||
Sbjct 1736 TTCGCCTTCAGAGCCGAAGCTTCTCAAGCGTTAAAACCGATGATTCAA-ACGCGGATTCT 1794
Query 1786 A 1786
|
Sbjct 1795 A 1795
Score = 708 bits (383), Expect = 0.0
Identities = 463/502 (92%), Gaps = 4/502 (1%)
Strand=Plus/Plus
Query 1850 AGCTTGAAGATGTCAAGAGAGCAGCCATCATAGACGCTGATGGATTGGCTGCAACATTGG 1909
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1796 AGCTTGAAGATGTCAAGAGAGCAGCCATCATAGACGCTGATGGTTTGGCTGCAACATTGG 1855
Query 1910 CAAATCTAAGTGGCTCGCTTACGAATGCAAGGGAGTTTTTGAAAACGATGGACGAAGAGA 1969
| ||| |||| || || ||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1856 CGAATATAAGCGGTTCACTTACGAATGCGAGGGAGTTTTTGAAAACAATGGATGAAGAGA 1915
Query 1970 GCGATTTCGAACGAGCATTAGCTGGATTTATAGAACGTGCAGATGCTGACATCAAATGGT 2029
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1916 GCGATTTCGAACGAGCATTAGCTGGATTTATAGAACGTGCAGATGCTGATTTTAAATGGT 1975
Query 2030 TGAAAGAAGAAGAAGAGAGAATAATGGTGTTGGTGAAAAGCTCTGCTGATTATTTCCATG 2089
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1976 TGAAGGAAGAAGAAGAGAGAATCATGGTTTTGGTGAAAAGCTCTGCTGATTATTTCCATG 2035
Query 2090 GGAAATCTGCGAAAAACGAAGGGCTACGTTTGTTCGCTATAGTGCGCGATTTCTTGATTA 2149
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2036 GGAAGTCTGCGAAAAACGAAGGACTACGTTTGTTCGCTATAGTGCGCGATTTCTTGATAA 2095
Query 2150 TGTTGGAGAAAGTTTGCAGAGAAGTTAAGGAAACAACGAAGACGAAGAACCATTCGGGTA 2209
|||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||
Sbjct 2096 TGTTGGAGAAAGTTTGCAGAGAAGTTAAGGAAACTACAAAGACGACGAACCATTCAGGTA 2155
Query 2210 AGAAGGAAA-CTGATACGATGTCTTCAGACAGTAATCAACCGTCTCCGGACATTC-GACA 2267
||||||||| | || | || |||| |||||||||||||||||||||||| ||| ||||
Sbjct 2156 AGAAGGAAAGC-GAAATGACAACTTCGGACAGTAATCAACCGTCTCCGGAC-TTCCGACA 2213
Query 2268 ACGTTTATTTCCAGCGATTGCTGAACGGAGAATCGACAGTTCGGATGATTCAGACGATGA 2327
|||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 2214 ACGTTTGTTTCCAGCGATTGCTGAACGAAGAATGGATAGTTCGGATGATTCAGACGATGA 2273
Query 2328 GGAAGATAGTTCACCTTCTTAG 2349
|| |||||||||||||| |||
Sbjct 2274 AGAGGATAGTTCACCTTCGTAG 2295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116615866035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5