BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890791

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15140.1 | Symbols:  | unknown protein; Has 26 Blast hits to...   726    0.0  


> AT4G15140.1 | Symbols:  | unknown protein; Has 26 Blast hits 
to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:8639424-8640291 REVERSE 
LENGTH=787
Length=787

 Score =  726 bits (393),  Expect = 0.0
 Identities = 471/507 (93%), Gaps = 12/507 (2%)
 Strand=Plus/Plus

Query  1    ATGGTGAATCAAAGATATCTACaagaagaagaagaagaagaagaaAAGGAGAATTATCCT  60
            ||||||||||||||| | ||||   |||||||||||| ||  ||||||||||||||||||
Sbjct  31   ATGGTGAATCAAAGAAAGCTAC---AAGAAGAAGAAG-AG--GAAAAGGAGAATTATCCT  84

Query  61   CTTATTACAACCAAAGTAGTTGAGTATTTGCAGCCAGTAATGTGTCGAGAGCTTCTCTGC  120
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  85   CTCATTACAACCAAAGTAGTTGAGTATTTGCAGCCAGTAATGTGTCGAGAGCTTCTCTGC  144

Query  121  AAATTTCCAGATAACTCTGCTTTTGGATTTGACTACACACAGAGCTCTCTTTGGTCTCCT  180
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  145  AAATTTCCAGATAACTCTGCTTTTGGATTCGACTACTCACAGAGCTCTCTTTGGTCTCCT  204

Query  181  CTCTTGCCTCGAAATTACGCTAGTCCTTCAGATCTAGACTCTGACAGTTGCGTTTGTCGG  240
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  205  CTCTTGCCTCGAAATTACGCCAGTCCTTCAGATCTAGACTCCGACAGTTGCGTTTGTCGG  264

Query  241  AATCTTAAGCTTGGAGAGTTTCAAGTAGGCaagaagaagaagatgaagatg-t--caatg  297
            ||||||||||| || |||||||||||||||||||||||||||||||||||| |  |||||
Sbjct  265  AATCTTAAGCTAGGGGAGTTTCAAGTAGGCAAGAAGAAGAAGATGAAGATGATGTCAATG  324

Query  298  aagaagaagaacaagaagaagaGTAAATTACTGAAATTAGACATAACTTCGATGAAGAAT  357
            ||||||||   ||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct  325  AAGAAGAA---CAAGAAGAAGAGTAAATTACTGAAACTAGACATACCTTCAATGAAGAAT  381

Query  358  GATGATGATTCTCCTAAAATTGGTTGCTTTCCTATTCATACCAAGGGATGGAATGGTGTG  417
            ||||||  ||||||||||||||| || |||||| | | ||||||||||||||||||||||
Sbjct  382  GATGATTCTTCTCCTAAAATTGGCTGTTTTCCTCTCCCTACCAAGGGATGGAATGGTGTG  441

Query  418  TTAAAGGCAGCTTCAAAACATTTCAAGAAATCGAAAAAGAAGAGAGATTCAGTGGCTGAT  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  442  TTAAAGGCAGCTTCAAAACATTTCAAGAAATCGAAAAAGAAGAGAGATTCATTCGCTGAT  501

Query  478  GCTAAGCTACTCGACTTCAAATGCTAA  504
            || ||||| ||||||||||||| ||||
Sbjct  502  GCCAAGCTTCTCGACTTCAAATACTAA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5