BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890798
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61610.1 | Symbols: | Galactose mutarotase-like superfamily... 399 4e-111
> AT3G61610.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr3:22799027-22801205 FORWARD LENGTH=1583
Length=1583
Score = 399 bits (216), Expect = 4e-111
Identities = 234/243 (96%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCATTACGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGATTGG 60
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATGGGTCAATATGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGATTGG 513
Query 61 AATGGCGTTGACCAAGTCCTTCTCAGGAACCCACATGGTGCTTCTGCCAAGATTAGTTTA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 514 AATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAGATAAGTTTA 573
Query 121 CATGGAGGACAAGTGATTTCATGGAGGAATGAACAAGGCGAAGAGCTTCTTTTCACTAGC 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 574 CATGGAGGACAAGTGATTTCATGGAGGAATGAACTAGGCGAAGAGCTTCTTTTCACTAGC 633
Query 181 AACAAGGCTATATTCAAACCTCCTAAATCAATGCGTGGAGGGATTCAGATTTGTTATCCT 240
|| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 634 AATAAGGCTATATTCAAACCCCCAAAATCAATGCGTGGAGGGATTCAGATTTGTTATCCG 693
Query 241 CAG 243
|||
Sbjct 694 CAG 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5