BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890804
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24690.1 | Symbols: | Transcriptional factor B3 family prot... 213 9e-55
> AT2G24690.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:10499551-10503140 REVERSE LENGTH=2364
Length=2364
Score = 213 bits (115), Expect = 9e-55
Identities = 182/212 (86%), Gaps = 13/212 (6%)
Strand=Plus/Plus
Query 89 AAACAGATGCACTG--T-ATCTTCCACAAGATTTCACTAGCTCAAATGGTCTTAACAGAA 145
|||||| ||||||| | |||||||||||| ||||||||||||||||||| ||| ||
Sbjct 203 AAACAGGTGCACTGCTTCATCTTCCACAAGGTTTCACTAGCTCAAATGGTAGTAATAGGG 262
Query 146 AAGGTAGCAAGAGTCCAAGACAGATTATATCATCATATTCGCCAAGCGAGAAACAATTCG 205
|| |||| |||||||| |||| ||||||||||||||||||| ||||||||||||| || |
Sbjct 263 AATGTAGAAAGAGTCCTAGACCGATTATATCATCATATTCGTCAAGCGAGAAACAGTTTG 322
Query 206 TAACATTTACACTTGCACCTG-T--T----G--A-TGTAGACTGCGTCTTCCGATGCAAT 255
|||| |||||||||||||||| | | | | |||||||||||||||||||||||||
Sbjct 323 TAACGTTTACACTTGCACCTGTTGATGGCAGACATTGTAGACTGCGTCTTCCGATGCAAT 382
Query 256 TCACAAGGGAGAATGGAATTAACAAGCCTGGG 287
|||| ||||||||||| |||||||||||||||
Sbjct 383 TCACGAGGGAGAATGGGATTAACAAGCCTGGG 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5