BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890806
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15040.1 | Symbols: | Subtilisin-like serine endopeptidase ... 2427 0.0
> AT4G15040.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr4:8581373-8584122 REVERSE LENGTH=2064
Length=2064
Score = 2427 bits (1314), Expect = 0.0
Identities = 1761/1973 (89%), Gaps = 45/1973 (2%)
Strand=Plus/Plus
Query 115 TCCGTTGAACATTCTTTGGTCAGAAGCTATGGAAGAAGTTTCAATGGTTTTGCAGCAAAA 174
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 82 TCCGTTGAAGATTATTTGGTCAGAAGCTATGGAAGAAGTTTCAATGGTTTTGCAGCCAAA 141
Query 175 CTTACTGAATCTGAAAGAGATAAACTTATGGGCATGGAAGGTGTGGTTTCGGTATTCCCA 234
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 142 CTTACTGAATCTGAAAAAGATAAACTTATTGGCATGGAAGGTGTGGTTTCGGTATTCCCA 201
Query 235 AACACCGTTTATAAGCTTCTTACAACAAGATCTTATGAGTTCATGGGACTTGGTGACAAG 294
| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 202 AGCACCGTTTATAAGCTTTTTACGACAAGGTCTTATGAGTTCATGGGACTTGGTGACAAG 261
Query 295 AGCAACCATGTCCCTAAAGTTGAGAGCAATATAATAGTTGGTGTAATCGACGGCGGAATC 354
|||||| |||||||| | || ||||||||| ||||||| |||||||| ||||||||||||
Sbjct 262 AGCAACAATGTCCCTGAGGTCGAGAGCAATGTAATAGTAGGTGTAATAGACGGCGGAATC 321
Query 355 TGGCCTGAATCCAAGAGTTTTTCAGACGAAGGCATTGGCCCAATACCAAAGAAATGGAAA 414
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 322 TGGCCTGAATCCAAAAGTTTTTCAGATGAAGGCATTGGCCCAATACCAAAGAAATGGAAA 381
Query 415 GGAACTTGTGCTGGAGGAACCAATTTCACCTGCAATAGGAAGGTGATTGGAGCACGACAC 474
|||||||| || |||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 382 GGAACTTGCGCAGGAGGAACTAATTTCACCTGCAATAGAAAGGTGATTGGAGCCCGACAC 441
Query 475 TATGTTCA-GAATTCCGCGAGGGACAAACAAC-CTCATGGGTCACACACGGCTTCAACAG 532
||||| || | | ||||| || ||| | || |||| ||||||||||||||||||||||
Sbjct 442 TATGTGCACG-ACTCCGCAAGAGAC-AGTGACGCTCACGGGTCACACACGGCTTCAACAG 499
Query 533 CCGCAGGAAACAAAGTAAAAGGAGTGAGTGTGAACGGTGTGGTAAAAGGAACCGCAAGAG 592
| |||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 500 CAGCAGGAAACAAAGTAAAAGGAGTGAGTGTGAACGGTGTGGCAGAAGGAACTGCAAGAG 559
Query 593 GTGCTGTACCTTTAGGTAGAATTGCTATTTACAGAGTTTGCGAGCCAGCAGGTTGTAATG 652
||| ||| |||||||||||||||||| |||||| ||| ||||||||| ||||| ||||
Sbjct 560 GTGGTGTGCCTTTAGGTAGAATTGCTGTTTACAAAGTGTGCGAGCCATTGGGTTGCAATG 619
Query 653 CCG-ACGGAATGTTGGCTGCGTTTGATGATGCTATAGCCGATGGAGTCGATGTTATAACC 711
| || |||| ||||||||||| || ||||||||||| ||||| || |||||| |||||
Sbjct 620 GTGAAC-GAATTTTGGCTGCGTTCGACGATGCTATAGCGGATGGGGTAGATGTTTTAACC 678
Query 712 ATTTCTATTGGTGGAGGTGTTACTAAAGTTGACATTGACCCTATCGCTATTGGATCGTTT 771
|||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 679 ATTTCTCTTGGAGGCGGTGTTACTAAAGTTGACATTGACCCTATCGCTATTGGATCATTT 738
Query 772 CACGCAATG-CTGAAAGGGATTGTTACTACTGCT-GCTGTTGGAAACGACGGCTCTAAAC 829
||||| ||| | |||||||||||||| || | | || |||||||| | |||| || |
Sbjct 739 CACGCGATGAC-CAAAGGGATTGTTACCAC-GGTAGCGGTTGGAAATGCCGGCACTGCA- 795
Query 830 CT-GGAAAAGCATCTAACCTTGCACCGTGGATCATATCCGTGGCAGCAGGTTCAACTGAT 888
|| | |||||| |||||||||||| ||| ||||||||||||| || || || |||||
Sbjct 796 CTCGCAAAAGCGGATAACCTTGCACCATGGCTCATATCCGTGGCTGCTGGCTCTACTGAC 855
Query 889 AGAAAGTTTGTTACTAATGTGGTTAATGGAGAAGGCAAAACCATACCGGGAAGATCGATC 948
||||| |||||||||||||||||||||||||| | ||| | |||| ||||||||||||
Sbjct 856 AGAAAATTTGTTACTAATGTGGTTAATGGAGATGACAAGATGTTACCTGGAAGATCGATC 915
Query 949 AATGACTTTGACTTAAAAGGAAAGAAGTATCCTTTGGCTTATGGAAAAACTGCTTCAAGT 1008
||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 916 AATGACTTTGACTTAGAGGGAAAGAAGTATCCTTTGGCGTATGGAAAAACTGCTTCAAAT 975
Query 1009 AACTGTACAGAGGAGCTAGCAAGGGGCTGCGCTAGCGGTTGCCTAAACACGGT-GAAGGG 1067
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||
Sbjct 976 AACTGTACAGAGGAGCTAGCAAGGGGTTGCGCTAGCGGTTGCCTGAACACGGTGGAA-GG 1034
Query 1068 AAAGATTGTTGTGTGCGATGTTCCAAATAATGTTATGGAACAGAAAGCAGGGGGTGCGGT 1127
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1035 AAAGATTGTTGTGTGCGATGTTCCAAATAATGTTATGGAACAGAAAGCAGCGGGTGCGGT 1094
Query 1128 TGGAACTATTCTTCATGTAACCGATGTTGATACTCCCGGTCTTGGTCCTATTGCGGTTGC 1187
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1095 TGGAACTATCCTTCATGTAACTGATGTTGATACTCCCGGTCTTGGTCCTATTGCCGTTGC 1154
Query 1188 AACCTTAGATGATTCCAATTATGAAGCATTCAGATCTTACGTTCTCTCCTCACCAAACCC 1247
||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 1155 AACCTTAGATGATACCAATTATGAAGAATTAAGATCCTACGTTCTCTCCTCACCAAACCC 1214
Query 1248 ACAAGGAACTATATTGAAGAGTGGGACAGTTAAAGACAATGATGCTCC-GATCGTTGCTA 1306
||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||
Sbjct 1215 GCAAGGAACTATATTGAAGACCAATACAGTTAAAGACAATGGTGCTCCAG-TCGTTCCT- 1272
Query 1307 GT-TTCTCTTCTCGTGGTCCAAACACTCTCTTTAGCGACATTTTGA--A--G--C-CG-- 1356
| ||||||||||| |||||||||||||||||||| |||||||||| | | | |
Sbjct 1273 GCCTTCTCTTCTCGCGGTCCAAACACTCTCTTTAGTGACATTTTGAGTAACGAACACTCA 1332
Query 1357 ----GATATTACAGCTCC-AGGAGTGAATATATTAGCGGCATATACACCATTGGCTCAAA 1411
|| || || | || | |||| ||||||||||| |||||| ||||| |||||||||
Sbjct 1333 AAACGAAATAACCGA-CCTATGAGTCAATATATTAGCAGCATATTCACCACTGGCTCAAA 1391
Query 1412 CCGCGCTTCCTGGACAAAGTGTCGATTACTATTTCATGACTGGAACATCTATGGCTTGTC 1471
||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 1392 CCGCG-TTCCTGGACAAAGCGTGGATTACTATTTCATGACGGGAACATCTATGGCTTGCC 1450
Query 1472 CTCATGTCGCAGGTGTAGCTGCTTATGTCAAGACACTACGTCCTGATTGGTCCGCTTCTG 1531
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1451 CTCATGTCGCAGGTGTAGCTGCTTATGTCAAGACACTACGTCCTGATTGGTCTGCTTCTG 1510
Query 1532 CCGTCAAATCTGCTATCATGACTACCGCTTGGGCAATGAACGTTTCGAAAAATGCAGATG 1591
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1511 CCATCAAATCTGCTATCATGACTACCGCTTGGGCAATGAACGCTTCGAAAAATGCAGAAG 1570
Query 1592 CTGAGTTTGCGTATGGATCAGGATATGTTAACCCTTCAGTAGCAGTTGAGCCAGGACTTG 1651
|||||||||| || |||||||||| |||||||||| |||| |||||||| ||||| ||||
Sbjct 1571 CTGAGTTTGCATACGGATCAGGATTTGTTAACCCTACAGTGGCAGTTGATCCAGGGCTTG 1630
Query 1652 TTTACGAAATCGCTAAAGAGGATTACTTGAACATGCTTTGCTCTTTGGACTACTCATC-C 1710
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1631 TTTACGAAATAGCCAAAGAGGATTACTTGAACATGCTTTGCTCTTTGGACTACTCTTCTC 1690
Query 1711 AAAGGCATTAGTACTC-TCGCGGGTGGTTCCTTTACTTGTTCTGAACAATCTAAGCTTAC 1769
|| || |||||||| | | |||||||| |||||||||||||||||||||| ||||||||
Sbjct 1691 AA-GGAATTAGTAC-CATTGCGGGTGGAACCTTTACTTGTTCTGAACAATCAAAGCTTAC 1748
Query 1770 TATGAGAAACCTCAACTACCCAGCAATGACAGCCAAAGTTTCAGGCT-CATCATCTTCAG 1828
||||||||| || |||||||| ||||| |||||||||| |||| || |||| |||||||
Sbjct 1749 TATGAGAAATCTAAACTACCCTTCAATGTCAGCCAAAGTGTCAG-CTTCATCGTCTTCAG 1807
Query 1829 ATATCACTTTTTCAAGAACCGTCACAAACGTTGGGGAAAAGGGATCCACTTACAAG-CAA 1887
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 1808 ATATCACTTTTTCAAGAACAGTCACCAACGTTGGGGAAAAGGGATCCACTTACAAGGCAA 1867
Query 1888 AATTGTCTGGGAATCCAAAACTCAGCATCAAGGTTGAGCCAGAGACTCTCTATTTCAAGT 1947
|||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||
Sbjct 1868 AATTGTCTGGGAATCCCAAACTCAGCATCAAGGTTGAGCCAGCTACACTCTCTTTCAAGG 1927
Query 1948 CACCGGGGGAGAAGAAGTCTTTCACTGTTACAGTCTCTGGCAAGAGTCTTGCTGGTATTT 2007
| || |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1928 CGCCAGGGGAGAAGAAGTCTTTCACCGTTACAGTCTCTGGAAAGAGTCTTGCGGGTATTT 1987
Query 2008 CTAGTATTGTGTCGGCGTCTCTTG-TTTGGTCGGATGGATT-ACGCAATGTGA 2058
||| |||||||||||| ||||| | ||||||||||||| || || ||||||||
Sbjct 1988 CTAATATTGTGTCGGCATCTCT-GATTTGGTCGGATGG-TTCACACAATGTGA 2038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102007507440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5