BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890808
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15030.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 961 0.0
> AT4G15030.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129);
Has 8498 Blast hits to 5699 proteins in 376
species: Archae - 6; Bacteria - 264; Metazoa - 3838; Fungi -
743; Plants - 650; Viruses - 76; Other Eukaryotes - 2921 (source:
NCBI BLink). | chr4:8578978-8581331 FORWARD LENGTH=1011
Length=1011
Score = 961 bits (520), Expect = 0.0
Identities = 609/650 (94%), Gaps = 14/650 (2%)
Strand=Plus/Plus
Query 1 ATGACTTCTTCGGCGGCGATCAGATCTCACATCTACGACAGAGAAGAACGC-A--A---- 53
||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 12 ATGACTTCTTCGGCGGCGATCAGATCTGACATCTACGACAGAGAAGAACGCAAGCATCGT 71
Query 54 ----GCA-GCAATACCAAGCACATATTCGTGGTCTGAATGCTTACGAGCGGCATAAGAAG 108
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 72 GTGTGCAGGCAATACCAAGCACATATTCGTGGCCTGAATGCTTACGAGCGGCATAAGAAG 131
Query 109 TTCTTGAAAGACTACGTTCGTTTTTATGGGAAGGATAAGCCAGCTGAAGTCAAATTACCG 168
|||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||||
Sbjct 132 TTCTTGAAAGACTACGTTCGATTTTATGGGAAGGATAAGCCTGCAGAAGTTAAGTTACCG 191
Query 169 GTTAAAACCGATCAGGACACACTACGAGAAGGATACCGGTTTATACGTTCTGAAGAAGAT 228
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 192 GTTAAAACTGATCAGGACACACTACGAGAAGGATACAGGTTTATACGTTCTGAAGAAGAT 251
Query 229 GATTTAAATCCTTCTTGGGAGCAAAGATTGGTGAAGCGATACTATGATAAGCTTTTTAAA 288
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 252 GATTTGGATCCTTCTTGGGAGCAAAGACTGGTGAAACGATACTATGATAAGCTTTTTAAA 311
Query 289 GAATACTGTATAGCTGACATGTCAAGATACAAGACTGGTAAGATTGGTTTAAGATGGAGA 348
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 312 GAATACTGTATAGCTGACATGTCAAGGTACAAGACTGGTAAGATGGGTTTAAGATGGAGA 371
Query 349 ACGGAAAAGGAAGTAATGACTGGGAAAGGGCAGTTTTTGTGTGGGAGCAAACATTGTGAT 408
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 372 ACAGAAAAGGAAGTAATGACTGGGAAAGGGCAGTTTATGTGTGGGAGCAAACATTGTGAT 431
Query 409 GAAAAGGAAGGGTTAGCAAGCTATGAGGTGAATTTTTCTTATCATGAAGCTGGAGAAGAT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GAAAAGGAAGGGTTAGCAAGCTATGAGGTGAATTTTTCTTATCATGAAGCTGGAGAAGAT 491
Query 469 AAGCAAGCCCTTGTAAAACTCGTAGCTTGTAAGAGATGTGCAGAGAAGCTT-TACTACaa 527
|| ||||| ||||||||||||||||||||| |||||||||| |||||| || ||||||||
Sbjct 492 AAACAAGCTCTTGTAAAACTCGTAGCTTGTGAGAGATGTGCTGAGAAG-TTATACTACAA 550
Query 528 aaaaagaaaggagggtgaaagatcagagagtaaagaaaagagaaagcagaaacgaaaaCG 587
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 551 AAAAAGAAAGGAGGGTGAAAGATCAGAGAGTAAAGAAAAGAAAAAACAGAAACGAAAACG 610
Query 588 GAGTCAATCACACAGTGAAGATGACACAGACGAAGAGGATAGGAGAAAAG 637
|||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 611 GAGTAAATCACACAGTGAAGATGACACAGACGAAGAGGAGAAAAGAAAAG 660
Score = 316 bits (171), Expect = 1e-85
Identities = 197/210 (94%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 529 aaaagaaaggagggtgaaagatcagagagtaaagaaaagagaaagcagaaacgaaaaCGG 588
|||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |||
Sbjct 651 AAAAGAAAAGAGGGTGAAAGATCAGAGAGTAATGAAAAGAAAAAACAGAAACGAAATCGG 710
Query 589 AGTCAATCACACAGTGAAGATGACACAGACGAAGAGGATAGGAGAAAAGGGAAAACAAGA 648
|||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 711 AGTCAATCTCACAGTGAATATGACACTGACGAAGAGGATAGGAGAAAAGGGAAAACAAGA 770
Query 649 AAGTCCAAGTTGGAAGGTGGTGATAGAGAAGGGAAGGATGATGAAAACTTTGATGAATAC 708
||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 771 AAGTCCAAGTTGGAAAGTGCTGATAGAGAAGGCAAGGATGATGAAAACTTCGATGAATAC 830
Query 709 ATGGAGGGGATGTTCCCGGGTAAGGGGTGA 738
||||||||||||||||||||||| ||||||
Sbjct 831 ATGGAGGGGATGTTCCCGGGTAATGGGTGA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5