BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890810

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15020.1 | Symbols:  | hAT transposon superfamily | chr4:857...   241    2e-63


> AT4G15020.1 | Symbols:  | hAT transposon superfamily | chr4:8575409-8578688 
FORWARD LENGTH=3020
Length=3020

 Score =  241 bits (130),  Expect = 2e-63
 Identities = 154/166 (93%), Gaps = 0/166 (0%)
 Strand=Plus/Plus

Query  48   ACGGGCCGGGTCGATTTCTCCGACATTGCAATCCTCCATCCTCCTCTGATTCCCTCCGCC  107
            |||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||
Sbjct  4    ACGGGCCGGGTCGATTTCTCCGCCATCGCAATCCTCCACCCTCCTCTGATTCTCTCCGCC  63

Query  108  GTTAGTCGGAAATCTCCATCTCCGGTTGATTCCAGCTTCCTCTTCTCCAGAACCGAAGCA  167
            ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct  64   GTTCGTCGGAAATCTCCATCTCCGGCTGATTCCAGCTTCCTCTTCTCCAGAACCGAAGCT  123

Query  168  ATTCTACCGGAATTTCATCACTTTCCCCGAAACCGATTCTTCGTAA  213
            | | ||||||||||| |||||||||||||||||||||||  |||||
Sbjct  124  ACTGTACCGGAATTTTATCACTTTCCCCGAAACCGATTCACCGTAA  169



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9500604561


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5