BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890818
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14950.1 | Symbols: | SNARE associated Golgi protein family... 1986 0.0
> AT4G14950.1 | Symbols: | SNARE associated Golgi protein family
| chr4:8545171-8548055 FORWARD LENGTH=1930
Length=1930
Score = 1986 bits (1075), Expect = 0.0
Identities = 1199/1258 (95%), Gaps = 11/1258 (1%)
Strand=Plus/Plus
Query 1 ATGGGATCGGCTGCG-GTTGCGAGTTCTTCTTCTGATGTTGCGATCTCAGCTCTGCGTGA 59
||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 347 ATGGGATCGGCTG-GTGTAGCGAGTTCTTCTTCTGATGTTGCGATCTCAGCTTTGCGTGA 405
Query 60 GAAGCATGAGAAGGAAGTAGAGAATCTAACATTGACCACACAACCTTTGAATACATTGAA 119
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 406 GAAGCATGAGAAGGAAGTAGAGAATCTAACATTAACGACACAACCTTTGAATACATTGAA 465
Query 120 GTTGTTTGTTGAGGCTACTATTCAGTACATCAAGCGATCGATATCGTATCT-TGTGGCTC 178
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 466 GTTGTTTGTTGAGGCTACTATTCAGTACATCAAGCGATCCATATCGTATCTAT-TGGCTC 524
Query 179 ATGGAGGATGGTTTATACTTATAACAACTTTGTTAGTGGCATCTGGTGGTTTGCTTATCA 238
||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||| | |
Sbjct 525 ATGGAGGTTGGTTTATACTGATAACCACTTTGTTAGTGGTATCTGGTGGTTTGCTTGTTA 584
Query 239 CTGTTGATGGACCTCATGGAAAGCATGTGGAAGAAGTATTAGAGTATGTCCGGTATGGCT 298
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 585 CTGTTGATGGACCTCATGGCAAGCATGTTGAAGAAGTATTAGAGTATGTCCGATATGGCT 644
Query 299 TATGGTGGATAGCACTCGGTGTCGCATCTTCTATTGGTCTTGGATCTGGTCTCCACACTT 358
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 645 TGTGGTGGATAGCACTTGGTGTTGCATCTTCTATTGGTCTTGGATCTGGTCTCCATACTT 704
Query 359 TCGTGCTCTATTTGGGTCCACACATTGCTTTGTTCACTCTAAAAGCAACGCTGTGTGGCC 418
|||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 705 TCGTTCTCTATTTGGGTCCGCACATTGCTTTGTTCACTCTAAAAGCAACGCTATGTGGTC 764
Query 419 GGGTTGATCTAAAATCTGCACCATATGATACAATACAGTTGAAAAGGGTTCCCTCATGGC 478
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 765 GAGTTGATCTAAAATCTGCACCATATGATACAATACAGTTGAAAAGGGTTCCTTCATGGC 824
Query 479 TTGATAAATCTTGTTCGGAATTCGGTCCTCCTTTAATGATATCAGCTGCTGGATCGCGTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTGATAAATCTTGTTCGGAATTCGGTCCTCCTTTAATGATATCAGCTGCTGGATCGCGTG 884
Query 539 TGCCCCTTACCAGCATATTGCCACAAGTCCAACTGGAGGCGATCTTATGGGGTATTGGGA 598
|||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 885 TGCCTCTTACCAGCATATTGCCACAAGTCCAGTTGGAGGCAATCTTATGGGGTATTGGGA 944
Query 599 CGGCTCTTGGGGAGCTTCCTCCATATTTCATCTCAAGAGCAGCTAGTATATCTGGGAGCA 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 945 CGGCTCTTGGGGAGCTTCCTCCATATTTCATCTCAAGGGCAGCTAGTATATCTGGGAGCA 1004
Query 659 CAGTGGATGGAATGGAAGAATTAGATGGTTCCT-CATCTGAGGATAGCGGATTTATGGCA 717
||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 1005 CAGTGGATGGAATGGAAGAATTAGATGGTTCCTCCA-CTGAAGATAGCGGATTTATGGCA 1063
Query 718 ACTTACCTAAACCGAATTAAGCGTTGGTTATTAACCCATTCACAGCACTTGAATTTCTTC 777
||| |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1064 ACTCACCTGAACCGTGTTAAGCGTTGGTTATTAACCCATTCACAGCACTTGAACTTCTTC 1123
Query 778 ACTGTCTTGGTTCTTGCTTCGGTTCCAAATCCTTTGTTTGACCTTGCTGGAATAATGTGT 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1124 ACTGTCTTGGTTCTTGCTTCGGTTCCAAATCCTTTGTTTGACCTCGCTGGAATAATGTGT 1183
Query 838 GGACAATTTGGAATTCCGTTTTGGGAATTCTTCCTGGCGACTTTAATCGGAAAGGCAATC 897
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1184 GGACAATTTGGCATTCCGTTTTGGGAATTCTTCCTGGCGACCTTAATCGGAAAGGCGATC 1243
Query 898 ATCAAAACTCACATACAGACAATATTTATCATCTGCGTTTGTAATAACCAACTGCTCGAC 957
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1244 ATCAAAACTCATATACAGACGATATTTATCATCTGCGTTTGTAATAACCAACTGCTTGAC 1303
Query 958 TGGATGGAGAACGAGCTGATCTGGATACTTAGCCATGTCCCGGGTTTGGCTTCTATGTTG 1017
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1304 TGGATGGAGAACGAACTGATCTGGATACTTAGCCATGTCCCGGGATTGGCTTCTATGTTG 1363
Query 1018 CCTGGACTCACAGCCAAACTCCACGCCATGAAAGAAAAGTATATTGATGCACCATCTCCT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CCTGGACTCACAGCCAAACTCCACGCCATGAAAGAAAAGTATATTGATGCACCATCTCCT 1423
Query 1078 GTTCCATCTCACATCAAGGTAGTGAAAAAGTGGGATTTTTCATTTGCATCGATCTGGAAC 1137
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1424 GTTCCATCTCACATCAAGGT-G--AAAAAGTGGGATTTTTCGTTTGCATCGATCTGGAAC 1480
Query 1138 GGGATAGTGTGGCTCATGCTCCTCAACTTCTTT-GTCAAGATTGTGACAGCAACTGCACA 1196
|||||||| |||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1481 GGGATAGTATGGCTCATGCTCCTCAACTT-TTTCGTGAAGATTGTGACAGCAACTGCACA 1539
Query 1197 GAGACACTTGAAGAAGAAGCAAGAGAAAGAAATGGCTGCTTTGACTCATTCAGATTGA 1254
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1540 GAGACACTTGAAGAAGAAGCAAGAGAAAGAAATGGCTACTTTGACTCATTCAGATTGA 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5