BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890836
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14815.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 667 0.0
> AT4G14815.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:8505043-8505952
FORWARD LENGTH=742
Length=742
Score = 667 bits (361), Expect = 0.0
Identities = 438/474 (92%), Gaps = 9/474 (2%)
Strand=Plus/Plus
Query 1 ATGAAACCTAGAATGTGTTTAATGTTGTTTATAGCTTTAATG-GCAGTGATGTCAACAGT 59
||||||||||||||||||||||| |||||||| ||||||||| | ||| ||||| | ||
Sbjct 80 ATGAAACCTAGAATGTGTTTAATCTTGTTTATTGCTTTAATGAG-AGTAATGTCGATTGT 138
Query 60 TTCTGCTCAGTCAAGCTGCACAAATGTCCTAATCAGCATGGCGCCGTGTCTCGGCTAT-A 118
|||||||||||| || ||||||||||| |||||||||||||||||||||||| ||| | |
Sbjct 139 TTCTGCTCAGTCGAGTTGCACAAATGTTCTAATCAGCATGGCGCCGTGTCTCAGCT-TCA 197
Query 119 TCACTCAAAACACTTCTACT-CCGTCTCAACAATGTTGTAGCCAGTTGGCTCATGTTGTT 177
||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 198 TCACTCAAAACACTTCT-CTCCCGTCTCAACAATGTTGTAACCAGTTGGCTCATGTTGTC 256
Query 178 CGATATTCTTCTGAGTGTTTGTGTGAAGTTCTCGATGGTGGAGGTTCTCAGCTTGGGATC 237
|| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 257 CGGTATTCTTCTGAGTGTTTGTGTCAGGTTCTCGATGGTGGAGGTTCTCAGCTTGGGATC 316
Query 238 AATGTTAATGAGACACAAGCTCTTGCTTTGCCTAAAGCTTGTCATGTCGAAACTCCTCCA 297
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 317 AATGTTAATGAGACACAAGCTCTTGCTTTGCCTAAAGCTTGTCATGTTGAAACTCCTCCT 376
Query 298 GCTAGTCGTTGCAATAGTGGTTCTTCGGTTAATTCGCATACAGAACATGGAAACGAATCA 357
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| | ||||
Sbjct 377 GCTAGTCGCTGCCATAGTGGTTCTTCGGTTAATTCACATTCAGAACATGGAAATGGATCA 436
Query 358 AAAACAGTCCCAGGAGAAAAGTCATCATCTAATGGTTCTATTAAGTTCTCATTCCCTCTT 417
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 437 AAAACAGTCCCAAGAGAAAAGTCATCATCTGATGGTTCTATTAAGTTCTCATTCCCTCTT 496
Query 418 CTCGCCATCCTTTTCACAGCTTCTTACAT--CAT-AATCTTCGCAAAATACTGA 468
||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 497 CTCGCCATCCTATTCACAGCTTCTTACATTACATTAATCTACGCAAAATACTGA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5