BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890839
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14790.1 | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helica... 2750 0.0
> AT4G14790.1 | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helicase,
mitochondrial (SUV3) | chr4:8496031-8500152 REVERSE LENGTH=2359
Length=2359
Score = 2750 bits (1489), Expect = 0.0
Identities = 1637/1710 (96%), Gaps = 4/1710 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTATTCTGTTCTTCGGCTTCGAAAGGTTTCAGCTTTGGGGATTTCTCGTGTTCTT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 ATGGCGTATTCTGTTGTTCGGCTTCGAAAGGTTTCAGCTTTGGGGATTTCTCGTGTTCTT 383
Query 61 CAAGCTGATCAGGGAAGTTTGTGGCGGTTTTACTCCGAACCTGAGTTTGGTGAGTTTTTG 120
||||||||| | |||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 384 CAAGCTGATAAAGGAAGTTTGTGGCGGTTTCACTTTGAACCTGAGTTTGGTGACCTTTTG 443
Query 121 AGATTAGGTGTCTTGACTAGGAACTACAGAAAGAACTCAGGATCTCCAAAGTTTGATTTC 180
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 444 AGATTAGGTGTCTTGACTAGGAATTATAGAAAGAACTCTGGATCTCCAAAGTTTGATTTC 503
Query 181 ACTGGCACGGGAACTACCTCAAAGTTCGATTTCACTGATCTCACCTGTCCTCATACATGG 240
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 ACTGGCACTGGAACCACCTCAAAGTTCGATTTCACTGATCTCACCTGTCCTCATACATGG 563
Query 241 TATCCAATAGCTCGGAAGAAGAAGCGTAAGGTTATTCTACATGTTGGCCCGACAAACAGT 300
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 564 TATCCTATAGCTCGGAAGAAGAAGCGTAAGGTCATTCTACATGTTGGCCCGACAAACAGC 623
Query 301 GGGAAGACATATAGTGCTCTTAAGCACCTTGAGCAGAGTTCTTCAGGCGTATATTGTGGT 360
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 624 GGGAAGACATATAGTGCCCTTAAGCACCTTGAACAGAGTTCTTCAGGTGTATATTGTGGT 683
Query 361 CCGTTAAGATTGTTGGCATGGGAGGTAGCTAAACGGTTAAACAAAGCAAATGTTCCATGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CCGTTAAGATTGTTGGCATGGGAGGTAGCTAAACGGTTAAACAAAGCAAATGTTCCATGT 743
Query 421 GATTTGATCACGGGACAAGAGAAAGACTTAGTGGAAGGGGCAACACACAAAGCTGTGACA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GATTTGATCACGGGACAAGAGAAAGACTTAGTGGAAGGGGCAACACACAAAGCTGTGACA 803
Query 481 GTTGAAATGGCTGATGTTACGTCGGTCTATGATTGTGCCATCATTGACGAAATTCAGATG 540
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 804 GTTGAAATGGCTGATGTTACATCTGTCTACGATTGTGCCATCATTGACGAAATTCAGATG 863
Query 541 GTGGGATGTACACAAAGGGGATTTGCATTTACTCGTGCTCTACTTGGAATCGCGGCTGAT 600
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 864 GTGGGATGTAAACAAAGGGGATTTGCATTTACTCGTGCTTTACTTGGAATCGCGGCTGAT 923
Query 601 GAGCTACATCTATGTGGCGATCCTGCTGTCGTACCTCTTGTTGAAGATATACTGAAAGTA 660
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 924 GAGCTACATTTATGTGGCGATCCAGCTGTCGTACCTCTTGTTGAAGATATACTGAAAGTA 983
Query 661 ACTGGAGATGATGTCGAGGTTCGA-ACATATGAGAGGCTTTCACCATTAGTCCCTTTGAA 719
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 984 ACTGGAGATGATGTCGAGGTTC-ATACCTATGAGAGGCTTTCACCATTAGTCCCTTTGAA 1042
Query 720 GGTGCCTGTTTCATCAGTTTCCAGTATCAAAACTGGGGATTGTCTTGTCACCTTTTCCCG 779
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1043 GGTTCCTGTTTCATCAGTTTCCAGTATTAAAACTGGGGATTGTCTTGTCACTTTTTCCCG 1102
Query 780 AAAAGATATATATGCATATAAGAAAATAATTGAACGTGCGGGGAATCATCTTTGCTCTGT 839
||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1103 AAAAGATATATATGCGTATAAGAAAACAATTGAACGTGCGGGGAAGCATCTTTGCTCTGT 1162
Query 840 GGTTTATGGTTCATTGCCTCCAGAGACTCGGACAGCACAGGCAACAAGGTTTAATGACGA 899
|||||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||
Sbjct 1163 GGTTTATGGTTCGTTGCCTCCAGAGACTCGCACGGCACAGGCAACAAGGTTTAACGATGA 1222
Query 900 GACCAATGACTTTGATGTGCTTGTTGCCAGCGATGCAATTGGCATGGGTCTTAATTTGAA 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1223 GACCAATGACTTTGATGTGCTTGTTGCCAGCGATGCGATTGGCATGGGTCTTAATTTGAA 1282
Query 960 TATTTCAAGGATTATCTTCTCGACCCTTCAAAAATTTGATGGTTCCGAGACCAGAGACCT 1019
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1283 TATTTCAAGGATTATCTTCTCGACCCTTCAAAAATATGATGGTTCCGAGACCAGAGACCT 1342
Query 1020 AACAGTATCTGAGATTAAACAAATTGCAGGGAGAGCTGGCAGATTCCGATCAAAGTTCCC 1079
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1343 AACAGTATCTGAGATTAAACAAATTGCAGGGAGAGCTGGCAGGTTTCAATCAAAGTTCCC 1402
Query 1080 TATTGGCGAAGTAACTTGTTTGCACAAAGAGGATCTTCCGTTGCTCCACTCTTCTCTCAA 1139
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1403 TATTGGCGAAGTAACTTGTTTGCACAAAGAGGATCTTCCGTTGCTTCACTCTTCTCTCAA 1462
Query 1140 GTCTCCTTCACCTCTTCTTGAGCGTGCTGGACTATTTCCAACATTTGACCTCCTTTCTAG 1199
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1463 GTCTCCATCACCTATTCTTGAGCGTGCTGGACTATTTCCAACATTTGACCTCCTATCTGG 1522
Query 1200 GTATTCCCAAGCACACCCTAAACACGGGTTGTACCAGATATTGGAACATTTTGTTGAAAA 1259
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1523 GTATTCCCAAGCACACCCTACACACGGGTTGTACCAGATATTGGAACATTTTGTTGAAAA 1582
Query 1260 TGCTAAGCTGTCTTCAAACTATTTCATCTCAAATGTTGAAGACATGATGAAAGTTGCTGC 1319
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1583 TGCTAAGCTGTCTTCAAACTACTTCATCTCTAATGTTGAAGACATGATGAAAGTTGCTGC 1642
Query 1320 CATTGTTGATGAATTACCCCTCGGATTGCAAGAGAAGTACCTCTTCGTAGTCAGTCCAGT 1379
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1643 CATTGTTGATGAATTACCCCTCGGATTGCAAGAGAAGTATCTTTTCGTGGTCAGTCCAGT 1702
Query 1380 TGATATAAATGACGAAATTTCAGGTCAGGGACTTGCACAGTTTGCTCACAACTTCTCGAA 1439
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1703 TGATGTAAATGACGAAATTTCAGGTCAGGGACTTGCACAGTTTGCTCAAAACTTCTCGAA 1762
Query 1440 GGCAGGCGTTGTGAGGCTCCGGGAGATACTTGCAGCC-GACAGAGTTAAGGTTCCCAAAA 1498
||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1763 GGCAGGCATTGTGAGGCTCCGGGAGATACTTGCA-CCTGACAGAGTGAAGGTTCCCAAAA 1821
Query 1499 CACCAACAGAACTAAAGGAACTTGAATCCATTCACAAGGTTTTGGATCTGTACGTATGGT 1558
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 CACCTACAGAACTCAAGGAACTTGAATCCATTCACAAGGTTTTGGATCTGTACGTATGGT 1881
Query 1559 TAAGCTTAAGGCTAGAGGATTCTTTTCCTGACCGCGAAGTAGCAGCTTCGCAAAAGTCAA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 TAAGCTTAAGGCTAGAGGATTCTTTTCCTGACCGCGAAGTAGCAGCTTCGCAAAAGTCAA 1941
Query 1619 TCTGCAATATATTGATTGAGCAATTCTTGGAGGGAAATAGATTAAACTCTCCTACCCGCG 1678
|||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 1942 TCTGCAATTTATTGATTGAGCAATTCTTAGAGGGAAATAGACTAAACTCTCCTGCCCGCT 2001
Query 1679 TCTCACGATATCTAAGAAAGCAAAAATTCT 1708
|||||||||||||||| ||||||| |||
Sbjct 2002 TCTCACGATATCTAAGGCGGCAAAAACTCT 2031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5