BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890856
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14720.1 | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT... 1423 0.0
AT4G14713.1 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT... 1103 0.0
> AT4G14720.1 | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT
motif family protein | chr4:8431973-8435075 REVERSE LENGTH=1568
Length=1568
Score = 1423 bits (770), Expect = 0.0
Identities = 899/958 (94%), Gaps = 22/958 (2%)
Strand=Plus/Plus
Query 1 ATGGATGTTGGAGTGT-CTCCGGCGAAGTCTATACTTGAGAAACCTCTGAAACTGCTCAC 59
|||||||| ||||| | || |||||||||||||||||||||| |||||||| || |||||
Sbjct 142 ATGGATGTAGGAGT-TACTACGGCGAAGTCTATACTTGAGAAGCCTCTGAAGCTTCTCAC 200
Query 60 TGAAGAGGACATTTCTCAGCTTACTCGCGAAGATTGCCGCAAATTCCTCAAAGAGAAAGG 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TGAAGAAGACATTTCTCAGCTTACTCGCGAAGATTGCCGCAAATTCCTCAAAGAGAAAGG 260
Query 120 AATGCGCAGGCCTTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCCCTTAAAGC 179
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 261 AATGCGCAGGCCTTCGTGGAATAAATCTCAGGCGATCCAGCAAGTTTTATCTCTTAAAGC 320
Query 180 TCTCTATGAGCCTGGAGACGATTCCGGCGCCGGAATCCTCCGCAAGATCCTCGTTTCTCA 239
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 321 TCTCTATGAACCTGGAGATGATTCCGGCGCCGGAATCCTCCGCAAGATCCTTGTTTCTCA 380
Query 240 GCCGTCAAATCCGCCTCGCGTTTCAACAACGTTGATTGAGCCAAGCAACGAGCTCGAAGC 299
|||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 381 GCCGCCAAATCCGCCTCGCGTTACAACAACGTTGATTGAGCCAAGGAACGAGCTCGAAGC 440
Query 300 TTGTGGCAA-GATT-C--T---GGAGGATGACGGCT-CGTGCCATAGAAGGGATTCTCCA 351
|||||| || |||| | | ||| ||||| || | |||||||||||||||||||||||
Sbjct 441 TTGTGG-AAGGATTCCTTTACAGGAAGATGATGG-TGCGTGCCATAGAAGGGATTCTCCA 498
Query 352 AGATCAGCTGAGTTTTCTGGTAGTTCTGGTCAGTTTGTTGCGGATAAAGATAGCCACAAG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AGATCAGCTGAGTTTTCTGGTAGTTCTGGTCAGTTTGTTGCGGATAAAGATAGCCACAAG 558
Query 412 ACTGTTTC-----CCCCAGCAGAAGCCCAGCTGAAACAAGTGCGCCGGTTGGGCAAATGA 466
|||||||| |||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 559 ACTGTTTCTGTTTCCCC--CAGAAGCCCAGCTGAAACAAATGCGGTGGTTGGGCAAATGA 616
Query 467 CGATATTCTATAGTGGCAAAGTGAATGTATATGATGGAGTACCACCTAAAAAGGCGCGGT 526
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 617 CGATATTTTATAGTGGCAAAGTGAATGTATATGATGGAGTACCACCTGAAAAGGCCCGGT 676
Query 527 CAATCATGCACTTTGCAGCTAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCTA 586
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CTATCATGCATTTTGCAGCCAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCTA 736
Query 587 GTAGAATGATTTCGAAGCCCATGAGTAAAGAGAAGATGGTGGAGCTTCCCCAATATGGCC 646
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 737 GTAGAATGATTTCGAAACCCATGAGTAAAGAGAAGATGGTGGAGCTTCCCCAATATGGAC 796
Query 647 TTGAAAAGGCAACTGCTTCTCGTGATTCCGATGTGGAGGGTCAGGCGAACAGAAAAGTGT 706
||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 797 TTGAAAAGGCACCTGCTTCTCGTGATTCTGATGTTGAGGGTCAGGCGAACAGAAAAGTAT 856
Query 707 CGTTGCAAAGATATCTTGAAAAGCGGAAAGACAGAAGATTCTCTAAGACCAAGAAGGCTC 766
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 857 CGTTGCAAAGATATCTTGAAAAGCGGAAAGACAGAAGATTTTCTAAGACCAAGAAGGCTC 916
Query 767 CAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAACGCTG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 CAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAACGCTG 976
Query 827 CATATTCACAAAACCTTAGTGGCACAGGGC-TCTGCGAGTCACCTGAAAATCAAACAAAA 885
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 977 CATATTCACAAAACCTTAGTGGCACAGGGCAT-TGCGAGTCACCTGAAAATCAAACAAAA 1035
Query 886 AGCCCCAATCTCTCAGTTGATCTAAACAGTGATCTAAACAGTGAAGGTA-TGAACAAG 942
|| |||||| ||||||||||||||||||||||||||||||| |||| || | ||||||
Sbjct 1036 AGTCCCAATATCTCAGTTGATCTAAACAGTGATCTAAACAGCGAAGATAATTAACAAG 1093
> AT4G14713.1 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT
motif family protein | chr4:8426710-8429647 REVERSE LENGTH=1438
Length=1438
Score = 1103 bits (597), Expect = 0.0
Identities = 833/942 (88%), Gaps = 35/942 (4%)
Strand=Plus/Plus
Query 1 ATGGATGTTGGAGTGTCTCCGGCGAAGTCTATACTTGAGAAACCTCTGAAACTGCTCACT 60
|||||||| ||||| || ||||||||||||||||||| |||||||||||| || ||||||
Sbjct 123 ATGGATGTCGGAGTTTCACCGGCGAAGTCTATACTTGCGAAACCTCTGAAGCTACTCACT 182
Query 61 GAAGAGGACATTTCTCAGCTTACTCGCGAAGATTGCCGCAAATTCCTCAAAGAGAAAGGA 120
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 183 GAAGAGGACATTTCTCAGCTCACTCGCGAAGACTGCCGCAAATTCCTCAAAGACAAAGGA 242
Query 121 ATGCGCAGGCCTTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCCCTTAAAGCT 180
||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 243 ATGCGAAGACCGTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCTCTTAAAGCT 302
Query 181 CTCTATGAGCCTGGAGACGATTCCGGCGCCGGAATCCTCCGCAAGATCCTCGTTTCTCAG 240
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 303 CTCTATGAGCCTGGAGACGATTCCGGCGCCGGTATCTTCCGCAAGATCCTCGTTTCTCAG 362
Query 241 CC-GTCAAATCCGCCTCGCGTTTCAACAACGTTGATTGAGCCAAGCAACGAGCTCGAAGC 299
|| || ||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 363 CCAGT-AAATCCGCCTCGCGTCACAACAACGTTGATTGAGCCAAGCAACGAGCTGGAAGC 421
Query 300 TTGTGG-CAAGATTC---T--GGAGGATGACGGCTCGTGCCATAGAAGGGATTCTCCAAG 353
|||||| | | ||| | ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct 422 TTGTGGCCGGGTTTCTTATCCGGAAGATAACGGCGCGTGCCATAGAATGGATTCTCCAAG 481
Query 354 ATCAGCTGAGTTTTCTGGTAGTTCTGGTCAGTTTGT-TGCGGATAAAGATAGCCAC-A-A 410
||||||||||||||| ||| | |||||||| ||||| | | || |||||| ||||| | |
Sbjct 482 ATCAGCTGAGTTTTCCGGTGGGTCTGGTCACTTTGTAT-CCGAGAAAGATGGCCACAAGA 540
Query 411 -GACTGTTTCCCCCAGCAGAAGCCCAGCTGAAACAAGTGCGC-CGGTTGGGCAAATGACG 468
|||| ||| | || ||||||||||||||||||||||| || | |||||||||||||||
Sbjct 541 CGACTATTT-CTCC--CAGAAGCCCAGCTGAAACAAGTGAGCTC-GTTGGGCAAATGACG 596
Query 469 ATATTCTATAGTGGCAAAGTGAATGTATATGATGGAGTACCACCTAAAAAGGCGCGGTCA 528
|||||||||||||| ||||||||||| ||||||||| |||||||| ||||||| ||||||
Sbjct 597 ATATTCTATAGTGGAAAAGTGAATGTGTATGATGGAATACCACCTGAAAAGGCCCGGTCA 656
Query 529 ATCATGCACTTTGCAGCTAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCTAGT 588
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 657 ATCATGCACTTTGCAGCCAATCCAATTGATTTGCCTGAAAACGGTATTTTTGCTTCCAGT 716
Query 589 AGAATGATTTCGAAGCCCATGAGTAAAGAGAAGATGGTGGAGCTTCCCCAATATGGCCTT 648
||||||||||| |||| ||| ||||||||||||||| |||| ||||||||| | ||||||
Sbjct 717 AGAATGATTTCAAAGCTCATAAGTAAAGAGAAGATGATGGAACTTCCCCAAAAAGGCCTT 776
Query 649 GAAAAGGC-AACTGCTTCTCGTGATTCCGATGTGGAGGGTCAGGCGAACAGAAAAGTGTC 707
|| ||||| || | ||||||||||||| | | ||||||| |||||||||||||| || ||
Sbjct 777 GAGAAGGCGAA-TTCTTCTCGTGATTCTGGTATGGAGGGCCAGGCGAACAGAAAGGTATC 835
Query 708 GTTGCAAAGATATCTTGAAAAGCGGAAAGACAGAAGATTCTCTAAGACCAAGAAG-GCTC 766
||||||||||||| |||||||||||||||||||| |||||| ||| |||| ||| | ||
Sbjct 836 TTTGCAAAGATATCGTGAAAAGCGGAAAGACAGAAAATTCTCAAAGGCCAAAAAGTG-TC 894
Query 767 CAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAACGCTG 826
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 895 CAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATTGTCAGCCACGGATGAAAGCTG 954
Query 827 CATATTCACAAAACCTTAG--TGGCACAGGG-CTC---TGC---G--AGTCACCTGAAAA 875
||||||| |||||||| || || ||| || ||| ||| | ||||||||||||
Sbjct 955 CATATTCGCAAAACCT-AGGCTG-CACCGGATCTCCACTGCATAGCCAGTCACCTGAAAG 1012
Query 876 TCAAACAAAAAGCCCCAATCTCTCAGTTGATCTAAACAGTGA 917
|| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1013 CCAGACAAAAAGTCCCAATCTTTCAGTTGATCTAAACAGTGA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5