BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890876
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14622.1 | Symbols: CPuORF60 | conserved peptide upstream op... 1328 0.0
AT4G14620.1 | Symbols: | Protein of unknown function (DUF506) ... 1328 0.0
> AT4G14622.1 | Symbols: CPuORF60 | conserved peptide upstream
open reading frame 60 | chr4:8389040-8390833 REVERSE LENGTH=1617
Length=1617
Score = 1328 bits (719), Expect = 0.0
Identities = 933/1031 (90%), Gaps = 35/1031 (3%)
Strand=Plus/Plus
Query 1 ATGATGAAGATTCAGCCGATTCACAACGATTTTCCGGCGAATAGAGTAGAATCATCAACC 60
||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 386 ATGATGAAGATCCAGCCGATTAACAACGATTTGCCGGCGAATAGAGTGGAATCATCAACC 445
Query 61 AAACCAGTGCTTAAGTCTCGTCTCAAACGTCTATTAGATCGACCGTTCACGAGAATCTCA 120
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 446 AAACCAGTGCTTAAGTCTCGTCTCAAGCGTTTATTAGATCGACCGTTCACGAGAATCTCA 505
Query 121 AACTCAGAGAAATCACTCATCGCCGGAGATGGAGTCGTCGCCGGAACAGAGTTCGAGCCA 180
||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 506 AACTCAGAGAAATTACTCATCTCTGGAGATGGAGTCGTCGCTGGAACAGAGTTCGAGCCA 565
Query 181 AGCTTAGCGAAATTGGTTCAAAACTATATGGAAGAAAACAACGACAAGCAAACAAAGAAT 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AGCTTAGCGAAAATGGTTCAAAACTATATGGAAGAAAACAACGACAAGCAAACAAAGAA- 624
Query 241 GGTGGTCGCAATAATCATCGTTGTAATTGTTTTAACGGGAACAATGATATCTCCGACGAT 300
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 625 --TGGTCGCAATACTCATCGTTGCAATTGTTTTAACGGGAACAATGATATCTCCGACGAT 682
Query 301 GAACTCGATATCTTCGATTATGACCATTTCAAGAGTTTGATTCAATGTGGAAGCTTCGTT 360
||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 683 GAACTCGATTTCTTCGATTATGACAATTTCAAGAGTTTGATTCAATGCGGAAGCTTCGTT 742
Query 361 GAGAAGAATCTGTTAGTGGAAGCTACGAAGATTATAGAGAAGAACAAATCAGTCAAAAGA 420
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 743 GAGAAGAGTCTTTTAGTGGAAGCTACGAAGATTATAGAGAAGAACAAATCAGTTAAAAGA 802
Query 421 AAAGACGAATTGAGAAAGATTGTTGTTGATGAACTCTTATTTCTCGGTTACGATTCTTCA 480
||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||
Sbjct 803 AAAGACGAATTGAGAAAGATTGTTGTTGATGAACTCTCATCTCTTGGTTACGACTCTTCA 862
Query 481 ATTTGTAAATCGAAATGGGATAAATCTCGCTCTATACCGGCCGGTGACTATGAGTACATA 540
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||
Sbjct 863 ATTTGTAAATCGAAATGGGATAAAACTCGTTCTATACCGGCCGGTGAGTATGAGTATATA 922
Query 541 GATGTGATTGTGAACGGAGAAAGGTTTTTAATTGACGTTGATTTTAGATCGGAGTTTGAG 600
|||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||
Sbjct 923 GATGTGATTGTGAACGGAGAGAGGTTGATAATCGACATTGATTTTAGATCGGAGTTTGAG 982
Query 601 ATCGCGAGGCAAACGAGTGGTTACAAGGAGTTGCTTCAATCTCTACCGTTGATTTTCGTC 660
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 ATCGCAAGGCAGACGAGTGGTTACAAGGAGTTGCTTCAATCTCTACCGTTGATTTTCGTC 1042
Query 661 GGAAAATCTGATCGGATTCGTCAGATTGTTTCTATGGTTTCGGAAGCGGCGAAACAGAGC 720
|||||||||||| |||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 1043 GGAAAATCTGATAGGATTCGTCAGATTGTTTCTATAGTTTCGGAAGCGTCAAAACAGAGC 1102
Query 721 TTGAAGAAGAAAGGTATGCATTTCCCGCCGTGGAGAAAAGCTGATTACATGAGAGCTAAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1103 TTGAAGAAGAAAGGTATGCATTTCCCGCCGTGGAGAAAAGCTGATTACATGCGCGCTAAG 1162
Query 781 TGGCTTTCTTCATATACTCGAGACTCCGGT-AAAAA--GCCGATGGTTACTA-TAACCGC 836
||||| ||||| || |||||| ||||||| ||||| ||||| ||||||| | ||||
Sbjct 1163 TGGCTATCTTCCTACACTCGAAACTCCGGCGAAAAAAAGCCGACGGTTACTTCTG-CCGC 1221
Query 837 GACCGCCGTAGCTGAACCGGAGCT-GATT-TT------T-GAG--GA-----GA--A-AT 877
|| | |||||||||||||||||| |||| || | ||| || || | |
Sbjct 1222 GAAAGTCGTAGCTGAACCGGAGCTAGATTCTTCGGAGATTGAGCTGATTTTCGAGGAGAA 1281
Query 878 --TCTTGTCGCCGCCGTTAAAGTCGTCTTCTTCGATTACGTCTGGTGGTAAAGATGATGA 935
|||||| |||||| || ||||| || | ||||||||||| ||||| |||||||||
Sbjct 1282 GGTCTTGTTGCCGCCATTGAAGTC-TC--C---GATTACGTCTGTTGGTAGAGATGATGA 1335
Query 936 TGACGTGGCAGAACCGGTTAAGAGAGAAGCAAAGGTCGTCACGGGATTAGCTTTACTGTT 995
|||||||||||| | || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1336 TGACGTGGCAGAGTCAGTGAAGAAAGAAGCAAAGGTCGTCACGGGATTAGCTTTACTGTT 1395
Query 996 CAAAGAAAATC 1006
|||||||||||
Sbjct 1396 CAAAGAAAATC 1406
> AT4G14620.1 | Symbols: | Protein of unknown function (DUF506)
| chr4:8389040-8390833 REVERSE LENGTH=1617
Length=1617
Score = 1328 bits (719), Expect = 0.0
Identities = 933/1031 (90%), Gaps = 35/1031 (3%)
Strand=Plus/Plus
Query 1 ATGATGAAGATTCAGCCGATTCACAACGATTTTCCGGCGAATAGAGTAGAATCATCAACC 60
||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 386 ATGATGAAGATCCAGCCGATTAACAACGATTTGCCGGCGAATAGAGTGGAATCATCAACC 445
Query 61 AAACCAGTGCTTAAGTCTCGTCTCAAACGTCTATTAGATCGACCGTTCACGAGAATCTCA 120
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 446 AAACCAGTGCTTAAGTCTCGTCTCAAGCGTTTATTAGATCGACCGTTCACGAGAATCTCA 505
Query 121 AACTCAGAGAAATCACTCATCGCCGGAGATGGAGTCGTCGCCGGAACAGAGTTCGAGCCA 180
||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 506 AACTCAGAGAAATTACTCATCTCTGGAGATGGAGTCGTCGCTGGAACAGAGTTCGAGCCA 565
Query 181 AGCTTAGCGAAATTGGTTCAAAACTATATGGAAGAAAACAACGACAAGCAAACAAAGAAT 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AGCTTAGCGAAAATGGTTCAAAACTATATGGAAGAAAACAACGACAAGCAAACAAAGAA- 624
Query 241 GGTGGTCGCAATAATCATCGTTGTAATTGTTTTAACGGGAACAATGATATCTCCGACGAT 300
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 625 --TGGTCGCAATACTCATCGTTGCAATTGTTTTAACGGGAACAATGATATCTCCGACGAT 682
Query 301 GAACTCGATATCTTCGATTATGACCATTTCAAGAGTTTGATTCAATGTGGAAGCTTCGTT 360
||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 683 GAACTCGATTTCTTCGATTATGACAATTTCAAGAGTTTGATTCAATGCGGAAGCTTCGTT 742
Query 361 GAGAAGAATCTGTTAGTGGAAGCTACGAAGATTATAGAGAAGAACAAATCAGTCAAAAGA 420
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 743 GAGAAGAGTCTTTTAGTGGAAGCTACGAAGATTATAGAGAAGAACAAATCAGTTAAAAGA 802
Query 421 AAAGACGAATTGAGAAAGATTGTTGTTGATGAACTCTTATTTCTCGGTTACGATTCTTCA 480
||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||
Sbjct 803 AAAGACGAATTGAGAAAGATTGTTGTTGATGAACTCTCATCTCTTGGTTACGACTCTTCA 862
Query 481 ATTTGTAAATCGAAATGGGATAAATCTCGCTCTATACCGGCCGGTGACTATGAGTACATA 540
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||
Sbjct 863 ATTTGTAAATCGAAATGGGATAAAACTCGTTCTATACCGGCCGGTGAGTATGAGTATATA 922
Query 541 GATGTGATTGTGAACGGAGAAAGGTTTTTAATTGACGTTGATTTTAGATCGGAGTTTGAG 600
|||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||
Sbjct 923 GATGTGATTGTGAACGGAGAGAGGTTGATAATCGACATTGATTTTAGATCGGAGTTTGAG 982
Query 601 ATCGCGAGGCAAACGAGTGGTTACAAGGAGTTGCTTCAATCTCTACCGTTGATTTTCGTC 660
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 ATCGCAAGGCAGACGAGTGGTTACAAGGAGTTGCTTCAATCTCTACCGTTGATTTTCGTC 1042
Query 661 GGAAAATCTGATCGGATTCGTCAGATTGTTTCTATGGTTTCGGAAGCGGCGAAACAGAGC 720
|||||||||||| |||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 1043 GGAAAATCTGATAGGATTCGTCAGATTGTTTCTATAGTTTCGGAAGCGTCAAAACAGAGC 1102
Query 721 TTGAAGAAGAAAGGTATGCATTTCCCGCCGTGGAGAAAAGCTGATTACATGAGAGCTAAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1103 TTGAAGAAGAAAGGTATGCATTTCCCGCCGTGGAGAAAAGCTGATTACATGCGCGCTAAG 1162
Query 781 TGGCTTTCTTCATATACTCGAGACTCCGGT-AAAAA--GCCGATGGTTACTA-TAACCGC 836
||||| ||||| || |||||| ||||||| ||||| ||||| ||||||| | ||||
Sbjct 1163 TGGCTATCTTCCTACACTCGAAACTCCGGCGAAAAAAAGCCGACGGTTACTTCTG-CCGC 1221
Query 837 GACCGCCGTAGCTGAACCGGAGCT-GATT-TT------T-GAG--GA-----GA--A-AT 877
|| | |||||||||||||||||| |||| || | ||| || || | |
Sbjct 1222 GAAAGTCGTAGCTGAACCGGAGCTAGATTCTTCGGAGATTGAGCTGATTTTCGAGGAGAA 1281
Query 878 --TCTTGTCGCCGCCGTTAAAGTCGTCTTCTTCGATTACGTCTGGTGGTAAAGATGATGA 935
|||||| |||||| || ||||| || | ||||||||||| ||||| |||||||||
Sbjct 1282 GGTCTTGTTGCCGCCATTGAAGTC-TC--C---GATTACGTCTGTTGGTAGAGATGATGA 1335
Query 936 TGACGTGGCAGAACCGGTTAAGAGAGAAGCAAAGGTCGTCACGGGATTAGCTTTACTGTT 995
|||||||||||| | || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1336 TGACGTGGCAGAGTCAGTGAAGAAAGAAGCAAAGGTCGTCACGGGATTAGCTTTACTGTT 1395
Query 996 CAAAGAAAATC 1006
|||||||||||
Sbjct 1396 CAAAGAAAATC 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5