BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890911

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30810.1 | Symbols:  | Gibberellin-regulated family protein ...   377    3e-104


> AT2G30810.1 | Symbols:  | Gibberellin-regulated family protein 
| chr2:13127826-13128666 REVERSE LENGTH=476
Length=476

 Score =  377 bits (204),  Expect = 3e-104
 Identities = 287/326 (88%), Gaps = 10/326 (3%)
 Strand=Plus/Plus

Query  1    ATGGTGAAGCTCATCA-tt-tttttAGTTGTATTCATTTTGTTGTTTGCTACTCAATTTT  58
            ||| |||||||||| | || | ||| ||| ||| || |||||||||||||||||||||||
Sbjct  37   ATGATGAAGCTCAT-AGTTGTCTTT-GTTATATCCAGTTTGTTGTTTGCTACTCAATTTT  94

Query  59   CTAATGCTGAGGGACTAGAAAGTCTAGTTGAAGCACCTGCAATCCATAAG-ATGAAAAGA  117
            |||||| ||| | | |||| |||| || | |||||||||||||||||||| |||  | ||
Sbjct  95   CTAATGGTGATGAATTAGAGAGTCAAGCTCAAGCACCTGCAATCCATAAGAATG-GAGGA  153

Query  118  GAAGGCTCACTTCGAAA--AGAAGAATGTCCAATGGCATGTGAATTTCGATGTTCAGTGA  175
            ||||||||||||  |||  |||||||||||||| ||||||||||| ||||||||| | ||
Sbjct  154  GAAGGCTCACTT--AAACCAGAAGAATGTCCAAAGGCATGTGAATATCGATGTTCGGCGA  211

Query  176  CATCTCACAAGAAATCATGTTTGTTTTTCTGTAACAAATGTTGTAACAAATGTTTGTGTG  235
            ||||||||| |||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  212  CATCTCACAGGAAACCATGTTTGTTTTTTTGCAACAAATGTTGTAACAAATGTTTGTGTG  271

Query  236  TACCGTCGGGAACATATGGACACAAAGAAGAATGTGCTTGCTACGATAAATGGAGGACCA  295
            |||| |||||||||||||||||||||||||||||| |||||||| |||| |||| |||||
Sbjct  272  TACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCTACAATAATTGGACGACCA  331

Query  296  AAAAAGGTGGACCAAAATGTCCATGA  321
            || |||||||||||||||||||||||
Sbjct  332  AAGAAGGTGGACCAAAATGTCCATGA  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5