BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890921
Length=192
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 285 1e-76
> AT4G14315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:8240957-8241315
FORWARD LENGTH=359
Length=359
Score = 285 bits (154), Expect = 1e-76
Identities = 172/181 (95%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 12 AATGGCGAATGAGTATGGATTCGGGATGGGTTCGGTTTTGGCGATTGTTGTCGTTGCACT 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 AATGGCGAATGAGTATGGATTCGGGATGGGTTCGGTTTTGGCGATTGTTGTCGTTGCACT 96
Query 72 AATGTTACTGATTCTTCCGTTGATGATGGGACCGGTAACTGCTCCATCTCCTCTACTTAT 131
|||||||||| || |||||||||||||||||||||| ||||| ||||||| || | | ||
Sbjct 97 AATGTTACTGTTTGTTCCGTTGATGATGGGACCGGTGACTGCACCATCTCTTCCAATGAT 156
Query 132 CTTGATGTTCCCGGTCGTATTGCTCTTTGTGTTTCTCTATCTCCATTTTACTTCCAAGTG 191
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 CTTGATGTTTCCGGTCGTATTGCTCTTTGTGTTTCTCTATCTCCATTTTACTTCCAAGTG 216
Query 192 A 192
|
Sbjct 217 A 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8500928319
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5