BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890923

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14305.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PM...   881    0.0  


> AT4G14305.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22) 
family protein | chr4:8235093-8236715 REVERSE LENGTH=910
Length=910

 Score =  881 bits (477),  Expect = 0.0
 Identities = 531/558 (95%), Gaps = 0/558 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGGATCTTGCGAAAGACGCATGGCGAAAATATTTGATTCAGCTCCAAGCTCACCCT  60
            |||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||| |||
Sbjct  111  ATGTCGGATCTTGCTAAAGACGCATGGCGAAAGTATCTGATTCAGCTTCAAGCTCATCCT  170

Query  61   TTACGAACCAAGGCGATCACTGCAGGGGTTTTAACAGGGTGCAGTGATGCTATAGCTCAG  120
            ||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct  171  TTACGAACCAAGGCGATCACTGCAGGGGTTTTAGCTGGATGTAGTGATGCTATAGCTCAG  230

Query  121  AAGATCTCTGGAGTTAAACGGATTCAGTTCCGGAGATTGCTTCTCCTTATGTTATATGGG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  231  AAGATCTCTGGAGTTAAACGGATTCAGTTCCGGAGATTGCTTCTCCTTATGTTGTATGGC  290

Query  181  TTTGCTTATGGAGGACCATTTGGTCACTTTTTCCACAAATTGATGGATACCATTTTCAAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  TTTGCTTATGGAGGACCATTTGGTCACTTTTTCCACAAATTGATGGATACCATTTTCAAA  350

Query  241  GGGAAGAAGGGTAATTCAACTGTTGCCAAAAAGGTTTTGTTGGAACAACTTACATCATCT  300
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  351  GGGAAGAAGGGTAATTCAACTGTTGCCAAAAAGGTTTTGTTGGAGCAACTTACATCATCT  410

Query  301  CCTTGGAACAATTTTCTTTTCATGTCTTACTATGGTTTAGTAGTTGAAGGGAGGCCATGG  360
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  411  CCTTGGAACAATTTTCTTTTCATGTCTTACTATGGTTTAGTAGTTGAAGGAAGGCCATGG  470

Query  361  AAGCTAGTGAAGCACAAAGTTGGGAAAGATTACCCTACGATCCAGTTAACAGCATGGAAG  420
            |||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||
Sbjct  471  AAGCTAGTGAAGCACAAACTTGGAAAAGATTACCCTACTATCCAGTTAACCGCATGGAAG  530

Query  421  TTCTGGCCTATTGTGGGATGGGTTAATTATCAGTATGTCCCTTTGCAATTCCGCGTCTTG  480
            ||||||||||| |||||||||||||||||||||||||| ||| | |||||||| || |||
Sbjct  531  TTCTGGCCTATCGTGGGATGGGTTAATTATCAGTATGTGCCTCTCCAATTCCGTGTTTTG  590

Query  481  TTCAGTAGCTTCGTCGCCTCTTGCTGGAGCATATTTCTGAACCTGAAAGCGCGATCTCCG  540
            ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  591  TTCAGCAGCTTCGTCGCCTCTTGCTGGAGCATATTTCTGAACTTGAAAGCGCGATCTCCG  650

Query  541  GCGATCAAAAACGCATAG  558
            | |||||||||||| |||
Sbjct  651  GTGATCAAAAACGCGTAG  668



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5