BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890926
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14290.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2573 0.0
> AT4G14290.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:8225481-8230281 REVERSE LENGTH=1967
Length=1967
Score = 2573 bits (1393), Expect = 0.0
Identities = 1583/1677 (94%), Gaps = 3/1677 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCAGCTTGTTAACTTCATTATTCGACCTCCAAGAGCTGAATACAATCCGGAACAT 60
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 225 ATGGAGCAGCTTGTTAACTTCGTCATTCGACCTCCAAGAGCTGAATACAATCCAGAACAT 284
Query 61 GATCTCTTGGAACAAGAGTTCTTGCTTAAAGGAAGATGGTATCAGAGGAAAGATTTAGAG 120
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 285 GATCTCTTGGAACAAGAGTTCTTGCTTAAAGGGAGATGGTACCAGAGGAAAGATTTAGAG 344
Query 121 GTTAAAAACATCAGAGGAGATATCCTTCAGTGTAGTCATTACATGCCAGTTGAGCGTCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GTTAAAAACATCAGAGGAGATATCCTTCAGTGTAGTCATTACATGCCAGTTGAGCGTCCT 404
Query 181 GAAGATAGGCCTCTACCTTGTGTAATATACTGCCATGGAAACAGTGGATGTAGAGCTGAT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 405 GAAGATAGGCCTCTACCTTGTGTAATATACTGCCATGGCAACAGTGGATGTAGAGCTGAT 464
Query 241 GCCAGTGAAGCTGCGATCGTATTACTTCCTTCAAACATCACGATTTTCACCCTTGACTTT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 465 GCCAGTGAAGCTGCGATCGTATTACTTCCTTCAAACATCACGATTTTCACGCTTGACTTT 524
Query 301 TCGGGATCTGGTCTCTCTGGCGGGGAGTATGTCACATTGGGTTGGAACGAAAAAGATGAT 360
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 525 TCGGGATCCGGTCTCTCTGGCGGGGAGCATGTCACTTTGGGTTGGAACGAAAAAGATGAT 584
Query 361 CTGAAAGCTGTGGTTGAGTATTTGCGCACGGATGGAAATGTCTCCCTGATTGGCTTATGG 420
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 585 CTGAAGGCTGTGGTTGAGTATTTGCGCACGGATGGGAATGTCTCCCTGATTGGCTTATGG 644
Query 421 GGTCGTTCAATGGGTGCTGTCACAAGTTTGATGTATGGAGCTGAGGATCCCTCTATTGCA 480
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 645 GGTCGTTCAATGGGTGCTGTCACAAGCTTGATGTACGGAGCAGAGGATCCCTCTATCGCA 704
Query 481 GCGATGGTTCTAGACAGCCCGTTCTCTGATTTGGTTGATTTGATGATGGAACTTGTAGAT 540
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 705 GCGATGGTTCTAGACAGCCCATTCTCTGATTTGGTTGATTTGATGATGGAGCTTGTAGAT 764
Query 541 ACATATAAGTTCCGGTTACCAAAGTTTACTATAAAATTTGCAATACAATATATGCGGAGA 600
|| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 765 ACGTATAAGTTCCGACTACCGAAGTTTACTATAAAATTTGCAATACAATATATGCGGAGA 824
Query 601 GCTGTTCAGAAGAAAGCCAATTTTAACATAACGGATCTCAACACCATTAAGGTAGCGAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GCTGTTCAGAAGAAAGCCAATTTTAACATAACGGATCTCAACACCATTAAGGTAGCGAAA 884
Query 661 TCTTGCTTTGTTCCTGTTTTATTTGGACATGCCATAGACGATGACTTTATTCAGCCTCAT 720
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 885 TCTTGTTTTGTTCCTGTTTTATTTGGACATGCCGTAGATGATGACTTTATTCAGCCTCAT 944
Query 721 CACTCAGAGCGTATATATGAAGCATACATAGGAGACAAAAATATCATCAAATTCGAGGGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 945 CACTCAGAGCGTATATATGAAGCATACATAGGAGACAAAAATATCATCAAATTCGATGGA 1004
Query 781 GACCACAATTCACCACGGCCACCATTCTACTTTGATTCAATAAACATCTTTTTCCATAAT 840
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1005 GACCACAATTCACCACGGCCACAATTCTACTTTGATTCAATAAACATCTTTTTCCATAAC 1064
Query 841 GTTCTTCAACCTCCGGAGGTGGTCAAGCCAACATTTTTTGACCCGGTGGATGATTACTTT 900
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1065 GTTCTTCAACCTCCAGAGGTGGTTGGGCCAACATTTTTTGACCCGGTGGATGACTACTTT 1124
Query 901 TCCAAGGGCAGTTGGAACACCATTCAAGAACTAAGTTCTCCACAATCCTCAGCACAGAAA 960
| ||||||||||||| |||||| ||| ||||||||||||| | ||||||||||||||||
Sbjct 1125 GCTAAGGGCAGTTGGAGCACCATGCAACAACTAAGTTCTCCCCCATCCTCAGCACAGAAA 1184
Query 961 AGTTTAGTTGCAGGAAGCACCTCCGATGCTATAAATGAAGTCCGCTTAAAAAGACCTATG 1020
||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGTTTAGCTCCAGGTAGCACCTCTGATGCTATAAATGAAGTCCGCTTAAAAAGACCTATG 1244
Query 1021 AGTCGCACAGAGGTTCCTTCCAATGACCCATCTAACCAATCATCATCAGAAACCAAGGAA 1080
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 1245 AGTCGCACAGAGGTTCCTTCCAACGACCCATCTAATCAATCGTCATCAGAAACCAAGGAA 1304
Query 1081 AAAGAGAATAATGAAGTCTCCAGTAGTTCATCTTCTGATATGATCAGCTTCGATTTGTCG 1140
||||||| | |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1305 AAAGAGAGTCTTGAAGTCTCCAGTAGTTCATCTTCTGATATGATCAGTTTTGATTTGTCG 1364
Query 1141 AATGGAGATCCATATCCTCCTCATCTTGCGGTAGCTTTAGATGATGATCAGTTTGTGGAG 1200
|||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||
Sbjct 1365 AATGGAGATCCATATCCTCCTCATCTCGCAGTAGCTTTAGATGATGATCAATATGTGGAG 1424
Query 1201 TTTCACGTAGATGAGCTGGCAGACTTTCCATCTAATGCAGAGGAAGAAGAGAGGATGTTG 1260
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||
Sbjct 1425 TTTCACGTAGATGAGCTGGCAGATTTTCCATCAAATGCAGAGGAAGAAGAGAGGATGCTG 1484
Query 1261 ATGGAAGCGGTGATGAAATCACTGAAGGACATGGAGGTTGAA-A--CTCATCAGAACAAA 1317
|||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||
Sbjct 1485 ATGGAAGCGGTGATGAAATCGCTGAAGGACATGGAGGTTGAACAAACTCATCAGAAAAAA 1544
Query 1318 GAACCCTCCAACACCAATACAGAGAACACTGAAGGTAATGCTGCTTCTTCTACTACAGAA 1377
||||| |||| ||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 1545 GAACCTTCCAGGACCAATACAGAGACCAGTGAAGGTAATGCTGCTGCTTCTACTACAGAA 1604
Query 1378 CAAGAATTGGCACATTCTGAGACAGCTCCTGCTCCTGGTCCAACACCATGTAACCATGGT 1437
| |||| |||||| |||||| |||| | ||||| |||||||||||||||||||||||| |
Sbjct 1605 CCAGAACTGGCACTTTCTGATACAGATTCTGCTTCTGGTCCAACACCATGTAACCATGAT 1664
Query 1438 GCGCGATCATCTTCTGAAGCCAGTGTTCCATTTAAAACATCAGATTCTCTGCCAGGACCT 1497
|| |||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1665 GCACGATTATCTTCTGTAGCCAGTGTTCCATCTAAAACATCAGATTCTCTGCCGGGACCT 1724
Query 1498 GTAAATGGTTTTGTTCCTGGTGCTTCACCCAAAACGAGTCAGAACAAAAACGACGTCATT 1557
|||||||||||||||||||||||||| || ||||||||||| |||||||| || ||||||
Sbjct 1725 GTAAATGGTTTTGTTCCTGGTGCTTCGCCTAAAACGAGTCAAAACAAAAATGATGTCATT 1784
Query 1558 GATTTATCAGCTCGTACAAAGGCAACAGTGACTGTGGTTGGACGTAGTAGCACATCAGGA 1617
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 GATTTGTCAGCACGTACAAAGGCAACAGTGACTGTGGTTGGACGTAGTAGCACATCAGGA 1844
Query 1618 AACGTTTTAGATGGGTTATTACGTCGATGGGATCTTAACTTCTTCAAAGGTAGATAA 1674
||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 1845 AACGTTTTAGAGGGGTTATTACGCCGATGGGATCTTAATTTCTTCAAAAGTAGATAA 1901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5