BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890933
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14250.1 | Symbols: | structural constituent of ribosome | ... 1247 0.0
AT1G59550.1 | Symbols: | UBX domain-containing protein | chr1:... 420 3e-116
> AT4G14250.1 | Symbols: | structural constituent of ribosome
| chr4:8208748-8213237 REVERSE LENGTH=2703
Length=2703
Score = 1247 bits (675), Expect = 0.0
Identities = 999/1144 (87%), Gaps = 67/1144 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAGTGCAACGAGTG-CTAACCAAC---TACAACTGATCTCATCTTTCCTCGACAT 56
||||||| ||||||||| | || |||||| | |||||||||||||||||||||| ||
Sbjct 1 ATGGAGACTGCAACGAG-GACTCACCAACAGAGAAAACTGATCTCATCTTTCCTCGATAT 59
Query 57 CACCGTTGGCCAAAGTGTAGAAATCGC-TCTTCAGTTCCTTAAGGCAACAAACTGGCACC 115
||||||| ||||| ||| |||||||| | ||||||||| ||||||||| |||| |||
Sbjct 60 CACCGTTAACCAAACTGTGGAAATCGCAAC-ACAGTTCCTTGAGGCAACAACCTGGAACC 118
Query 116 TTGAAGATGCCATCAACCTCTTTCTCATCGCTAGGAGAAACCCT-A--AT--CC------ 164
|||||||||| ||||||||||||||||||||| ||||||||||| | || ||
Sbjct 119 TTGAAGATGCGATCAACCTCTTTCTCATCGCTCGGAGAAACCCTCATCATCACCATGGAG 178
Query 165 -AGAACAAGTCCCTCTTCCTTTACCTTCGATGATGGATACTCTCTACG---AC--T-CTT 217
||||| ||||||||||||||||||||||| || | |||||||||||| || | |||
Sbjct 179 AAGAACTAGTCCCTCTTCCTTTACCTTCGAAGAAGAATACTCTCTACGACTACGATCCTT 238
Query 218 CCATG-CGTCACAACACTTCGGTCGCCGTATCTCCTGAAGATATCT-GG--GAC---TCG 270
|||| | |||||||||||||||||| |||| ||||||||| |||| || ||| |||
Sbjct 239 TCATGTC-TCACAACACTTCGGTCGCAGTATGTCCTGAAGAGATCTGGGACGACGAGTCG 297
Query 271 ACATCTGAGGAGTCCGAATCCTATTCAAGGTTGTCTTCCTTGTACCGTCCTCCTCCAAGT 330
|||||| ||| |||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 298 ACATCT---GAG---GAATCCGATTCTAGGTTGTCTTCTTTGTACCGTCCTCCTCCAAGT 351
Query 331 CTGTTTTTCCATGGTTCGTTTGAAGATGCGAAAGCAACTTCCTCTAGAGAGGATCTATGG 390
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 352 CTGTTTTTCCACGGTTCGTTTGAAGATGCGAAAGCAACGTCCTCTAGAGAGGATCTATGG 411
Query 391 TTGCTTGTCTATGATCATACCAACGAAGGTCAGAAGATATCTACTTTTTACAAGATCGAC 450
|||||||| || | | | ||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 412 TTGCTTGT-TA--ACC-T-CCA-CGAAGGTCAGAAAATATCTACTTTCTACAAGATCGAC 465
Query 451 TTTGCTCCTCCTGTGGTTCTCCTCATCGATCCCGTCACTGGCCAGAAGATGCGTATGTGG 510
| || |||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 466 TCTGTTCCTCCTGTGGTGCTTCTCATCGATCCCATCACTGGCCAGAAGATGCGTATGTGG 525
Query 511 AGCGGTATGATTGAACCTCAGGGTTTTCTTGAGGATTTGATGAAGTACATGGATGCTGGT 570
|||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 526 AGCGGTGTGATTGAACCTCAGGGCTTTCTCGAGGATTTGATGAAGTACATGGATTCTGGT 585
Query 571 CCTCACGAACATGTTGCTTCTCT-A-A-GCAACAAACGTATCAAAACAGAGAAGATTTCC 627
||||||||||| ||||| ||||| | | ||||||||||||| |||||||||||||| |||
Sbjct 586 CCTCACGAACACGTTGCATCTCTGACAAGCAACAAACGTATGAAAACAGAGAAGATCTCC 645
Query 628 T-TTCCAAGCAACAACGCTGATGATCAAGTAGACATGGCGACTTTCTGGGGTGATGATAT 686
| ||| ||| ||||||||||||||||||| | |||||| ||||||||||| | | |||
Sbjct 646 TGTTC-AAGTAACAACGCTGATGATCAAG-A--CATGGCTACTTTCTGGGGAAACGCTAT 701
Query 687 TGAAGAAGAAAAGACTGTAGCCAAAGATGAAAAGGAGGAGA-----A--TCT---CG--T 734
||||||||||||||||||| |||| || ||||||||||| | ||| || |
Sbjct 702 TGAAGAAGAAAAGACTGTAATCAAATCTGGAAAGGAGGAGACTTTTACGTCTGATCGCGT 761
Query 735 TGTGGCTCCTTCTTGGGGGCAAGAATTTGAAGACATAAAGACTTTATCCGACCATGAGGA 794
|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||
Sbjct 762 TGTGGCTCCTTCTTGGGGGCCAGAATTTGAAGACATAATGACTTTATCCGAACATGAGGA 821
Query 795 GGAAACTTGTTTGTCAAGCGACCTGTTTGAGTTCCCGGTTTTGACAGAAGAGCCAAAAGA 854
|||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 822 GGAAACTTGTTTGTCATGCGACCTGCTTGAGTTTCCGGTTTTGACAGAAGAGCCTAAAGC 881
Query 855 AGACTGTGATAGAAGCATTGTGTGCAGT-TTGTGCGTTCGATTTCCAGATGGAAGAAGAA 913
|||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||
Sbjct 882 AGACTGTGATAGAAGCGTTGTGTGCAGTATT-TGTGTTCGATTTCCAGATGGGAGAAGAA 940
Query 914 AGCAGAGGAAGTTTCTCAAGAGCGAACCAATACAACTTCTCTGGTCTTTCTGTTATTCTC 973
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 941 AGCAGAGGAAGTTTCTCAAGAGCGAACCGATTCAGCTTCTCTGGTCTTTCTGTTATTCTC 1000
Query 974 ACATGGAGGAATCCGAGAAGAAGGCGTTCAGGCTTGTGCAGGCGATTCCTGGTGCTTCCA 1033
||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 1001 ACATGGAGGAATCCGAGAAAAAGGAGTTCAAGCTTGTGCAGGCGATTCCTGGTGCTTCCA 1060
Query 1034 AGACTCTGGATTATGGAGCTAATGTCACGTTTGATCACTCTGGGCTTGCTAATTCGATGA 1093
|||||||||||||||||||||| | |||||||||||| |||||| | |||||||||||||
Sbjct 1061 AGACTCTGGATTATGGAGCTAAGGCCACGTTTGATCAATCTGGGATCGCTAATTCGATGA 1120
Query 1094 TTTC 1097
||||
Sbjct 1121 TTTC 1124
Score = 1155 bits (625), Expect = 0.0
Identities = 806/891 (90%), Gaps = 21/891 (2%)
Strand=Plus/Plus
Query 1204 GTGAATCTCCAGTCCAGGACGGAGTTAGCTTCTCATACACTTAATAGAGATGTATGGGCG 1263
|||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||
Sbjct 1588 GTGAATCTCCAGTCCAGGACAGAGTTAGGTTCTCATATACTTAATCGAGATGTATGGGCG 1647
Query 1264 AAGGACGCGGTTTCGCGAAACATTGAGT-CTAGCTGCATCGTATGGCAGGTCTATGATGA 1322
|| |||||||||||| ||| |||||||| | | || ||||||||||||||||||||||||
Sbjct 1648 AACGACGCGGTTTCGAGAACCATTGAGTCCCA-CTTCATCGTATGGCAGGTCTATGATGA 1706
Query 1323 TACAAACGAAGGTCAGAAAGTCTCTAGCTTCTACAAGATCGAATCTGCTCCTCCTGTGGT 1382
||||||||||||||||||| ||||||| ||||||||||||||| || |||||||||||||
Sbjct 1707 TACAAACGAAGGTCAGAAAATCTCTAGTTTCTACAAGATCGAAGCTCCTCCTCCTGTGGT 1766
Query 1383 TTTTGTAATCAATCCCATCACTGGCCAGAAGATGCGTATGTGGAGTGGCGTGATTGAACC 1442
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct 1767 GTTTGTAATCAATCCCATCACTGGCCAGAAGATGCATATGTGGAGCGGCGTGATTGAAGC 1826
Query 1443 TGACAGTTTTGTCGAGGATTTGATGATGTTTAGGGACGCTGCTCGTCACGAAAACATTGC 1502
||| ||| ||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 1827 TGAGAGTATTGTCGAGGATTTGATGATGTTTTGGGACGCTGGTCCTCACGAAAACATTGC 1886
Query 1503 TTCTCTGACAAGGAACAGGCGCACGGAAACTACAGAGACTTGTTCGTTAAGCAACAACAT 1562
||||||||||||||||||||||||||||||| | |||||||||| || |||| ||||| |
Sbjct 1887 TTCTCTGACAAGGAACAGGCGCACGGAAACTGCGGAGACTTGTTTGTCAAGCTACAACTT 1946
Query 1563 CTATTATGAAACCCCTCCTCCTTCCTGGGGTGAAGAGTTTGAAAAGGAGGATACTTGTTC 1622
|||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||
Sbjct 1947 CTAT---GAAACCCCTGCTCCTTCCTGGGGTGAAGAGTTTGAAGAGGAGGATAATTGGTC 2003
Query 1623 GTCAAGAAACAATAACAATCAAGTCGTGGCTCCT--T-GGGAGCAAGAATTTGAAGACCA 1679
|||||||| ||| || |||||||||||||||||| | ||||| ||||| ||||||| ||
Sbjct 2004 GTCAAGAAGCAACAATAATCAAGTCGTGGCTCCTACTTGGGAGAAAGAACTTGAAGAACA 2063
Query 1680 AGAC-AGGGGGGAGACTTGGTCGTCACGCAGCGACACTGATGACTTTGTGCCTCCTTCTA 1738
|||| || ||| ||| ||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 2064 AGACGAGTGGG-AGATTTGGTCGTCACGCAGTGACACTGATGACTTCGTGCCTCCTTTTA 2122
Query 1739 TAGCGGACGAATATGAAGACTCTG-ATGAAGTAAAGGAGGAGGAGGAGACTTGTTTAGTG 1797
| | ||||||||||||||| || | |||||||||||||||||||| | | | ||||||||
Sbjct 2123 TGGGGGACGAATATGAAGA-TCCGGATGAAGTAAAGGAGGAGGAG-ATA-T-GTTTAGTG 2178
Query 1798 TTCCCGGTTTTGGCAGAAGAGCCAAATGGAGACTGTGATCGAAGTTTTGTGTGTAGTCTC 1857
|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2179 TTCCCGGTTTTGACAGAAGAGCCAAAAGGAGACTGTGATCGAAGCGTTGTGTGTAGTCTC 2238
Query 1858 TGCGTTCGATTTCCAGATGGGAGAAGAAAACAGAGGA-GATTTCTCAAGAGCGAACGGAT 1916
||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||
Sbjct 2239 TGCGTTCGATTTCCAGATGGGAGAAGAAAGCAGAGGAAG-TTTCTCAAGAGCGAACCGAT 2297
Query 1917 TCAGCTTCTTTGGTCTTTCTGTTATTCCCACAT-GAATGAATCTGAGAAAA-GGTCGTTC 1974
||||||||||||||| ||||||||||| ||||| || |||||||||||||| || | |||
Sbjct 2298 TCAGCTTCTTTGGTCATTCTGTTATTCTCACATTGA-TGAATCTGAGAAAAAGG-CATTC 2355
Query 1975 AAGCTGGTGCAGGCGATTCCCGGTGCTTCCAAGACTCTAGATTATGAAGCTGACACCACG 2034
||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 2356 AAGCTGGTGCAGGCGATTCCCGGTGCTTCAAAGACTCTAGATTGTGAAGCTGACGCCACG 2415
Query 2035 TTTGACCAATCCGGGCTCGCTAATTCGATGATCTCGGTTACTTGGGAGTGA 2085
|| |||||||| ||||| ||||||||| ||||||||||||||||||| |||
Sbjct 2416 TTCGACCAATCTGGGCTTGCTAATTCGCTGATCTCGGTTACTTGGGAATGA 2466
Score = 333 bits (180), Expect = 4e-90
Identities = 249/283 (88%), Gaps = 1/283 (0%)
Strand=Plus/Plus
Query 818 TGTTT-GAGTTCCCGGTTTTGACAGAAGAGCCAAAAGAAGACTGTGATAGAAGCATTGTG 876
||||| | ||||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 2170 TGTTTAGTGTTCCCGGTTTTGACAGAAGAGCCAAAAGGAGACTGTGATCGAAGCGTTGTG 2229
Query 877 TGCAGTTTGTGCGTTCGATTTCCAGATGGAAGAAGAAAGCAGAGGAAGTTTCTCAAGAGC 936
|| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2230 TGTAGTCTCTGCGTTCGATTTCCAGATGGGAGAAGAAAGCAGAGGAAGTTTCTCAAGAGC 2289
Query 937 GAACCAATACAACTTCTCTGGTCTTTCTGTTATTCTCACATGGAGGAATCCGAGAAGAAG 996
||||| || || ||||| ||||| ||||||||||||||||| || ||||| ||||| |||
Sbjct 2290 GAACCGATTCAGCTTCTTTGGTCATTCTGTTATTCTCACATTGATGAATCTGAGAAAAAG 2349
Query 997 GCGTTCAGGCTTGTGCAGGCGATTCCTGGTGCTTCCAAGACTCTGGATTATGGAGCTAAT 1056
|| |||| ||| |||||||||||||| |||||||| |||||||| |||| || |||| |
Sbjct 2350 GCATTCAAGCTGGTGCAGGCGATTCCCGGTGCTTCAAAGACTCTAGATTGTGAAGCTGAC 2409
Query 1057 GTCACGTTTGATCACTCTGGGCTTGCTAATTCGATGATTTCGG 1099
| |||||| || || |||||||||||||||||| |||| ||||
Sbjct 2410 GCCACGTTCGACCAATCTGGGCTTGCTAATTCGCTGATCTCGG 2452
Score = 189 bits (102), Expect = 9e-47
Identities = 163/193 (84%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 1328 ACGAAGGTCAGAAAGTCTCTAGC-TTCTACAAGATCGAATCTGCTCCTCCTGTGGTTTTT 1386
|||||||||||||| | |||| | |||||||||||||| |||| |||||||||||| ||
Sbjct 428 ACGAAGGTCAGAAAATATCTA-CTTTCTACAAGATCGACTCTGTTCCTCCTGTGGTGCTT 486
Query 1387 GTAATCAATCCCATCACTGGCCAGAAGATGCGTATGTGGAGTGGCGTGATTGAACCTGAC 1446
| ||| |||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 487 CTCATCGATCCCATCACTGGCCAGAAGATGCGTATGTGGAGCGGTGTGATTGAACCTCAG 546
Query 1447 AGTTTTGTCGAGGATTTGATGATGTTTAGGGACGCTGCTCGTCACGAAAACATTGCTTCT 1506
| ||| ||||||||||||||| || | ||| ||| || ||||||| || |||| |||
Sbjct 547 GGCTTTCTCGAGGATTTGATGAAGTACATGGATTCTGGTCCTCACGAACACGTTGCATCT 606
Query 1507 CTGACAAGGAACA 1519
|||||||| ||||
Sbjct 607 CTGACAAGCAACA 619
> AT1G59550.1 | Symbols: | UBX domain-containing protein | chr1:21879649-21880788
REVERSE LENGTH=924
Length=924
Score = 420 bits (227), Expect = 3e-116
Identities = 322/369 (87%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 732 CGTTGTGGCTCCTTCTTGGGGGCAAGAATTTGAAGACATAAAGACTTTATCCGACCATGA 791
||| |||| | ||||||| |||| ||||||||| || || |||||||||||| ||||
Sbjct 543 CGTCGTGGTTTCTTCTTGCGGGCGAGAATTTGATGATGTAGTGACTTTATCCGAAGATGA 602
Query 792 GGAGGAAACTTGTTTGTCAAGCGACCTGTTTGAGTTCCCGGTTTTGACAGAAGAGCCAAA 851
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 603 GGAGGAAACTTGTTTGTCAAGCGACCTGTTTGAGTTCCCAGTTTTGACAAAAGAGCCTAA 662
Query 852 AGAAGACTGTGATAGAAGCATTGTGTGCAGTTTGTGCGTTCGATTTCCAGATGGAAGAAG 911
|| |||||||||| ||||| |||| || ||| | |||||||||||||| |||| |||||
Sbjct 663 AGGAGACTGTGATCGAAGCGTTGTCTGTAGTATCAGCGTTCGATTTCCAAATGGGAGAAG 722
Query 912 AAAGCAGAGGAAGTTTCTCAAGAGCGAACCAATACAACTTCTCTGGTCTTTCTGTTATTC 971
||||||||| |||||||||||||| ||||| | || |||||||||||||||||||||||
Sbjct 723 AAAGCAGAGAAAGTTTCTCAAGAGTGAACCGGTTCAGCTTCTCTGGTCTTTCTGTTATTC 782
Query 972 TCACATGGAGGAATCCGAGAAGAAGGCGTTCAGGCTTGTGCAGGCGATTCCTGGTGCTTC 1031
||||||||| ||||| || || |||||||||| ||| |||||||||||||||||||||||
Sbjct 783 TCACATGGATGAATCAGATAACAAGGCGTTCAAGCTAGTGCAGGCGATTCCTGGTGCTTC 842
Query 1032 CAAGACTCTGGATTATGGAGCT-AATGTCACGTTTGATCACTCTGGGCTTGCTAATTCGA 1090
|||||||||||||||||||||| || | | |||||||||| | |||| | ||||||||||
Sbjct 843 CAAGACTCTGGATTATGGAGCTGAA-GCCTCGTTTGATCAATATGGGATCGCTAATTCGA 901
Query 1091 TGATTTCGG 1099
| || ||||
Sbjct 902 TCATCTCGG 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103362922155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5