BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890936
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14226.1 | Symbols: | unknown protein; Has 30201 Blast hits... 254 8e-67
> AT4G14226.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8199425-8199592
REVERSE LENGTH=168
Length=168
Score = 254 bits (137), Expect = 8e-67
Identities = 158/168 (94%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 310 ATGAACTTCATTATGTGTAAGAATTCAGAAGCTGAGAACCTTGAAGTTTCTCTGGACAGA 369
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 1 ATGAACTTCATTATGTGTAAGAATCCAGAAGCTGAGAACCCTGAAGTTTCTCTGGACACA 60
Query 370 ACCGGGAAGATTATTGGAAAGTGGAGGGCGTGGTTGAAAAACTCTTTGGCCTTAATGCTC 429
||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 61 ACCCGGAAGATTAGTGGAAAGTGGAGGGCGTGGATGAACAACTCTTTGGCCTTAATGCTT 120
Query 430 CCATTACTCAAACAAATTTCCCATGGACAATCAACAACA-TCGACTAA 476
||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 121 CCATTACTCAAACAAATTTCCCATGGACAATCAGCAACAATCGACTAA 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5