BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890951
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14120.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 475 3e-133
> AT4G14120.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G23740.1);
Has 18 Blast hits to 16 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8135124-8136967
FORWARD LENGTH=1323
Length=1323
Score = 475 bits (257), Expect = 3e-133
Identities = 508/619 (82%), Gaps = 58/619 (9%)
Strand=Plus/Plus
Query 391 GGTTCTATCAATCAAGAGATCAATGGGGTCTCTGGGAAGAAAGTTGGTACCAATCTTGGC 450
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 569 GGTTCTATCAATCAAGAGATCAGTGAGGTCTCTGGGAAGAAAGTTGGTACCAATCTCGGC 628
Query 451 AGCAAAGTGATTCGTCATCCGGAAAAGATTTTTAAGAACCCTGGCTCGGTGAGCTATAGA 510
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 629 AGCAAAGTGATTCGTCATCCGGAAAAGATTTTCAAGAACCCTGGCTCTGTGAGCTATAGA 688
Query 511 AGAATGCTTCCTTATTTGATGGAAGCTGCAGATGGTACTAGAGATGCTGATGCGAATGAT 570
|||||||||||||| ||||||||||||||||||| ||| |||||| |||||| || |||
Sbjct 689 AGAATGCTTCCTTACTTGATGGAAGCTGCAGATGTTACCCGAGATGGTGATGCAAAAGAT 748
Query 571 C-TAAAGAATCAAAGAGGTGAATCGATGGCAACGAAGAACCGACTTCTTGAAACCGAGCC 629
| ||| || | |||||||||||| ||||||| | || ||||||||| ||||||||
Sbjct 749 CCTAAGGA-TGAAAGAGGTGAATTGATGGCAGCAAATTACCGACTTCCTGAAACCG---- 803
Query 630 TGTTTGGCAATGTACCAATAACTTTGTTAAACCATCAGCTCAAAGTTTACATGGAAACAT 689
| | | || |||||| |||||||||| ||||| | |||||||
Sbjct 804 TAT----C--TG--CCAATAGCTTTGTTAAA------GCTCA---T------GGAAACAA 840
Query 690 TAGCCCTTTCAAGACTATGACTTCATCTAATGGCACCAAAATTTCGT-TGTGCT-CCAAA 747
|||||||||||||| ||||||||||| | ||||| ||||||||| | |||||| ||
Sbjct 841 TAGCCCTTTCAAGAAGATGACTTCATCCAGTGGCAACAAAATTTC-TCTGTGCTGCCGG- 898
Query 748 CGCAAGCTATTTAAAGTGCCAGGTTCTGTAAATTACAGAAGAATGCTTTCATATCTCAAA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGCAAGCTATTTAAAGTGCCAGGTTCTGTAAATTACAGAAGAATGCTTTCATATCTCAAA 958
Query 808 GAGAACTCAGAGGGTAATCCTGTGA-CGCCTGAAACCA-G--TA-A--TC----G----- 851
||||||||||||| ||||| || || | |||||||||| | || | || |
Sbjct 959 GAGAACTCAGAGGATAATCATG-GAACTCCTGAAACCACGCATACAGATCCTCAGAAGAA 1017
Query 852 TACAGAGGA-AACAGCTCCAGCCACTGAGACTAAAGGGGCATCAAGTGAAGCTAGAGATT 910
|| |||||| || ||| |||| | |||| ||||||||||||||| ||||| || |||||
Sbjct 1018 TATAGAGGAGAAT-GCTTCAGCTATTGAGGCTAAAGGGGCATCAAATGAAGTTACAGATT 1076
Query 911 T-GAATACATGCTCTAACGATGTTGA-AGCGCCACTCTCTGATTTAGAGGAACGAACAGG 968
| || ||||||||||||| | ||||| | ||||||| ||||| | || || || || |
Sbjct 1077 TAGA-TACATGCTCTAACAACGTTGAGA-CGCCACTAGCTGATCCAAAG-AATGAGCAAG 1133
Query 969 AAGCTCAAACTTTTGTTAG 987
|| ||||| ||||||||||
Sbjct 1134 AAACTCAA-CTTTTGTTAG 1151
Score = 436 bits (236), Expect = 1e-121
Identities = 309/345 (90%), Gaps = 2/345 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAATCAGATCATATCTTGGGGAAGAAGATGCGATTTTCGTCTTCTTCAGTTCGT 60
||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 62 ATGGCCGAATCAGATCCTATATTGAGGAAGAAGATGCGATTTTCGTCTTCTTCAGTTCGT 121
Query 61 TACACTACCTCCCATAACCTTATGGCAAGCAAATTACGGACTCAGAGCAATCGTTCCTCC 120
|| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 122 TATACTACCTCTCAGAACCTTATGGCAAGCAAATTACGAACTCAGAGCAATCGTTCCTCC 181
Query 121 GTTCGATTTGCATCCTCAGTGTCTCACATTGTCACGGATCTTCGTCACCATCATGCGTCA 180
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTTCGATTTGCATCCCCATTGTCTCACATTGTCACGGATCTTCGTCACCATCATGCGTCA 241
Query 181 TCGCTCACCGGGAAACTCGAGACTAAAAAT-CCTCGGTCGTGTTCTCGTGTCTCGGTGAA 239
|| ||| |||||| | | ||| ||| | || || | |||||||||||| | |||||
Sbjct 242 CCGATCAAAGGGAAAATTGTTACTCAAA-TGCCCCGAACTTGTTCTCGTGTCACCGTGAA 300
Query 240 GAATCTGTGTCTCAGACGCGTATTCTCTCCGAGTTCGATTTCTAACGATTGGGACTTTCA 299
|||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||
Sbjct 301 GAATCTGTGTCTCAGACGCGTATTCTCTCCTAGTTCCATCTCTAGTGATTGGGACTTTCA 360
Query 300 CATGAAAGGGGAAAATCAAACCAAGGAGCTAAATGTGGAATCTCC 344
||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 361 TGTGAAAGGGGGAAATCTAACCAAGGAGCTAAATGTGGAATCTCC 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5