BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890953
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14103.2 | Symbols: | F-box/RNI-like superfamily protein | ... 905 0.0
AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein | ... 693 0.0
> AT4G14103.2 | Symbols: | F-box/RNI-like superfamily protein
| chr4:8126915-8128833 FORWARD LENGTH=1608
Length=1608
Score = 905 bits (490), Expect = 0.0
Identities = 598/650 (92%), Gaps = 8/650 (1%)
Strand=Plus/Plus
Query 5 GAGATGGCGTTGATCCAGTCCGTATCATTCCTTGGATACACAATGTGTTGGAACGCGGTG 64
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 314 GAGATGGCATTGATCCAGTCCGTATCATTCCTTGGATAAATAATGTGTTGGAACGGGGTG 373
Query 65 TATCCGATCTTTATCTACACCTGAATTTGGAATCAGAATTTCTGCTTCCTTCAAAAGTCT 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 374 TATCCGATCTTGATCTACACCTGAATTTGGAATCAGAATTTCTGCTTCCTTCACAAGTCT 433
Query 125 ACTTGAGCAAGACACTGGTTAGGCTGAAGATATA-TTTTGGGCAATATCCCACCATTGAT 183
||||| |||||||||||||| |||||||| || | ||||||| ||||||||| ||||||
Sbjct 434 ACTTGTGCAAGACACTGGTTTGGCTGAAGCTA-AGGTTTGGGCTATATCCCACGATTGAT 492
Query 184 GTTGAAGATGTTCATCTCCCAAAGCTTAAGACTCTCTATATTGAGTCAAGCCATTTTGAA 243
|||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||
Sbjct 493 GTTGAAGATGTTCATCTCCCAAAGCTTAAGACGCTTTATATTGAGGCAACCCATTTTGAA 552
Query 244 AAGCATGGTATTGGGCTTAGCAAGTTTCTTTCTGGTTGTTCCATGCTTGAGGATTTAGTT 303
|||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct 553 GAGCATGGTGTTGGGCTTACCAAGCTTCTTTCTGGTTGTCCCATGCTTGAGGATTTAGTT 612
Query 304 CTGGAAGATATATCTTGGTTCTTTTGGGATTTCGCGTCGGTGTCTGTCCCAACTCTCAAG 363
|| || ||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 613 CTTGATGATATATCTTGGTTCATTTGGGATTTTGCCTCGGTGTCTGTCCCAACTCTCAAG 672
Query 364 AGGCTAACGTTTTGCTGGGAAGAGCGATATGATTTTCCAAAGAGTGTATCTATT-GATAC 422
||||||| |||| ||||| |||||||| |||| |||||||||||||| | | || |||||
Sbjct 673 AGGCTAAGGTTTAGCTGGCAAGAGCGAGATGAGTTTCCAAAGAGTGTGT-TGTTAGATAC 731
Query 423 TCCAAATCTTGTCTACTTGAAGTTTACTGACACTGTTGCAGGCAAGTATCCGAAAGTGAA 482
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 732 TCCGAATCTTGTATACTTGAAGTTTACTGATACTGTTGCAGGCAAGTATCCGAAAGTGAA 791
Query 483 TTTCGATTCGCTGGTTGAAGCCCATATCGATCTTCACTTGTTGAAGCCAT-TATTGATAC 541
||| ||||| || |||||||| ||||||||||||| |||||||||||| | ||||||||
Sbjct 792 TTTGGATTCCCTTGTTGAAGCTCATATCGATCTTCGCTTGTTGAAGCC-TCTATTGATAA 850
Query 542 AGTACCATCAAGGTTATGGGGAAAATGATATGGTTGGCAATGCAACAGATTTTATAATGC 601
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 851 ATTACCATCAAGGTTATGGGGAAAATGATATGGTTGGCAATGCTACAGATTTTATAATGC 910
Query 602 G-ACTATGCAATGTGAAGACTCTTTATCTATCTGCCAACACTCTTCAGGT 650
| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GTA-TATGCAATGTGAAGACTCTTTATCTATCTGCCAACACTCTTCAGGT 959
> AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:8124415-8126514 FORWARD LENGTH=1825
Length=1825
Score = 693 bits (375), Expect = 0.0
Identities = 567/655 (87%), Gaps = 31/655 (5%)
Strand=Plus/Plus
Query 1 ATCAGAGATGGCGTTGATCCAGTCCGTATCATTCCTTGGATACACAATGTGTTGGAACGC 60
||| ||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||
Sbjct 383 ATCGGAGATGGCGTTGAACCAGACCGTATCATTCCTTGGATAAATAATGTGTTGGAACGC 442
Query 61 GGTGTATCCGATCTTTATCTACACCTGAATTTGGAATCAGAATTTCTGCTTCCTTCAAAA 120
||||||||||||||| |||||||| || || ||||| | |||||| || ||||||| | |
Sbjct 443 GGTGTATCCGATCTTGATCTACACGTGTATATGGAAACGGAATTTGTGTTTCCTTC-AGA 501
Query 121 G-TCTACTTGAGCAAGACACTGGTTAGGCTGAAGATATATTTTGGGCAATATCCCAC-CA 178
| | | |||||||||||||||||||||||||||| || | | || |||| || | |
Sbjct 502 GATGTTCTTGAGCAAGACACTGGTTAGGCTGAAGCTA-A---T--GCTATAT-CCTCTC- 553
Query 179 TT-G-ATGTTGAAGATGTTCATCTCCCAAAGCTTAAGACTCTCTATATTGAGTCAAGCCA 236
|| | || ||||||||||| ||||||| ||||||||||| || |||||||| ||| || |
Sbjct 554 TTGGAAT-TTGAAGATGTTTATCTCCCGAAGCTTAAGACGCTTTATATTGACTCATGCTA 612
Query 237 TTTTGAAAAGCATGGTATTGGGCTTAGCAAGTTTCTTTCTGGTTGTTCCATGCTTGAGGA 296
|||||||||| ||||||||||||||| |||| |||||||||||||| |||| ||||||||
Sbjct 613 TTTTGAAAAGTATGGTATTGGGCTTACCAAGCTTCTTTCTGGTTGTCCCATACTTGAGGA 672
Query 297 TTTAGTTCTGGAAGATATATCTTGGTTCTTTTGGGATTTCGCGTCGGTGTCTGTCCCAAC 356
||||||||| || |||||| |||||| | ||||||||| || |||||||||||||||||
Sbjct 673 TTTAGTTCTTGATGATATACCTTGGTGCACTTGGGATTTTGCCTCGGTGTCTGTCCCAAC 732
Query 357 TCTCAAGAGGCTAACGTTTTGCTGGGAAGAGCGATATGATTTTCCAAAGAGTGTATCTAT 416
||||||||| ||||||||| || | ||| |||| |||| |||||||||||||| |||||
Sbjct 733 TCTCAAGAGACTAACGTTTAGCACGCAAGTGCGAGATGAGTTTCCAAAGAGTGTGTCTAT 792
Query 417 TGATACTCCAAATCTTGTCTACTTGAAGTTTACTGACACTGTTGCAGGCAAGTATCCGAA 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGATACTCCGAATCTTGTCTACTTGAAGTTTACTGACACTGTTGCAGGCAAGTATCCGAA 852
Query 477 AGTGAATTTCGATTCGCTGGTTGAAGCCCATATCGATCTTCACTTGTTGAAGCCATTATT 536
|||||||||||||||||| |||||||| |||||||||||| | | | || ||
Sbjct 853 AGTGAATTTCGATTCGCTTGTTGAAGCTCATATCGATCTT-A---G---A-----TTGTT 900
Query 537 GATACAGTACCATCAAGGTTATGGGGAAAATGATATGGTTGGCAATGCAACAGATTTTAT 596
| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 901 -A--CAGGGCCATCAAGGTTATGGTGAAAATGATATGGTTGGCAATGCAACAGATTTTAT 957
Query 597 AATGCG-ACTATGCAATGTGAAGACTCTTTATCTATCTGCCAACACTCTTCAGGT 650
|||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 958 AATGCGTA-TATGCAATGTGAAGACTCTCTATCTATCTTCCAACACTCTTCAGGT 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5