BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890967

Length=2901
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48775.1 | Symbols:  | other RNA | chr5:19774170-19776460 FO...  60.2    1e-07
  AT5G48770.1 | Symbols:  | Disease resistance protein (TIR-NBS-L...  60.2    1e-07


> AT5G48775.1 | Symbols:  | other RNA | chr5:19774170-19776460 
FORWARD LENGTH=2060
Length=2060

 Score = 60.2 bits (32),  Expect = 1e-07
 Identities = 44/50 (88%), Gaps = 0/50 (0%)
 Strand=Plus/Minus

Query  1048  GTCGCATGTCTTTTCAATGGAGAACCAGTCTTGCGAGTCACAACCCTTCT  1097
             |||||||||||||||||||||||||||||||  || ||  | ||||||||
Sbjct  1544  GTCGCATGTCTTTTCAATGGAGAACCAGTCTCCCGTGTTTCTACCCTTCT  1495


> AT5G48770.1 | Symbols:  | Disease resistance protein (TIR-NBS-LRR 
class) family | chr5:19773277-19777242 REVERSE LENGTH=3573
Length=3573

 Score = 60.2 bits (32),  Expect = 1e-07
 Identities = 44/50 (88%), Gaps = 0/50 (0%)
 Strand=Plus/Plus

Query  1048  GTCGCATGTCTTTTCAATGGAGAACCAGTCTTGCGAGTCACAACCCTTCT  1097
             |||||||||||||||||||||||||||||||  || ||  | ||||||||
Sbjct  1318  GTCGCATGTCTTTTCAATGGAGAACCAGTCTCCCGTGTTTCTACCCTTCT  1367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 144179794182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5