BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg890967 Length=2901 Score E Sequences producing significant alignments: (Bits) Value AT5G48775.1 | Symbols: | other RNA | chr5:19774170-19776460 FO... 60.2 1e-07 AT5G48770.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 60.2 1e-07 > AT5G48775.1 | Symbols: | other RNA | chr5:19774170-19776460 FORWARD LENGTH=2060 Length=2060 Score = 60.2 bits (32), Expect = 1e-07 Identities = 44/50 (88%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 1048 GTCGCATGTCTTTTCAATGGAGAACCAGTCTTGCGAGTCACAACCCTTCT 1097 ||||||||||||||||||||||||||||||| || || | |||||||| Sbjct 1544 GTCGCATGTCTTTTCAATGGAGAACCAGTCTCCCGTGTTTCTACCCTTCT 1495 > AT5G48770.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:19773277-19777242 REVERSE LENGTH=3573 Length=3573 Score = 60.2 bits (32), Expect = 1e-07 Identities = 44/50 (88%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 1048 GTCGCATGTCTTTTCAATGGAGAACCAGTCTTGCGAGTCACAACCCTTCT 1097 ||||||||||||||||||||||||||||||| || || | |||||||| Sbjct 1318 GTCGCATGTCTTTTCAATGGAGAACCAGTCTCCCGTGTTTCTACCCTTCT 1367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 144179794182 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5