BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890976

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13955.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   412    6e-115


> AT4G13955.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr4:8059307-8059742 FORWARD LENGTH=285
Length=285

 Score =  412 bits (223),  Expect = 6e-115
 Identities = 265/285 (93%), Gaps = 3/285 (1%)
 Strand=Plus/Plus

Query  1    ATGGCCATTCAGAAGTTTTCATATTTTCTCTTACTTTTGTTGATGGTGTTTGCTCTCATC  60
            ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    ATGGCCACTCAGAAGTTTTCATATTTTCTCTTAGTTTTGTTGATGGTGTTTGCTCTCATC  60

Query  61   CTTCCATCCATAATTTCAGTCGAAGTCATACCGTGTATACCGGGATCAAAATGTACAAAC  120
            |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  61   CTTCCATCAATAATTTCAGTCGAAGTCATACCCTGTATAGCGGGATCAAAATGTACAAAC  120

Query  121  GATATGACATGCAACGAACTTTGTAGATTTAAAGGATTCAACAAAGGAGGGTTTTGTCAA  180
            |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  121  GATATGACATACAACGAACTTTGTAGATTTAAAGGATTCAGCAAAGGAGGGTTTTGTCAA  180

Query  181  AAATATGTTCACAAAACAACCGGCCAATGTTGCTGCCATCCT---GGTTTCGAATCTCAA  237
            |||||||||||| |||| | ||| |  |||||||||||||||   ||||| |||||||||
Sbjct  181  AAATATGTTCACCAAACGATCGGTCGGTGTTGCTGCCATCCTACAGGTTTGGAATCTCAA  240

Query  238  GAGTATTCCACAACCGGTGATACCAATGTAGTCATTACTAATTAA  282
            |||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct  241  GAGTCTTCCATATCCGGTGATACCAATGTAGTCATTACTAATTAA  285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5