BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg890982 Length=321 Score E Sequences producing significant alignments: (Bits) Value AT5G28285.1 | Symbols: | transposable element gene | chr5:1026... 291 4e-78 > AT5G28285.1 | Symbols: | transposable element gene | chr5:10264891-10268620 REVERSE LENGTH=3730 Length=3730 Score = 291 bits (157), Expect = 4e-78 Identities = 177/187 (95%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 25 ATGCGTCCACCAATAAACATTGGCGGTCGTTTATATGGACAAGGATCGAGTTCTCAAGCT 84 ||||||||| |||||| |||| |||||||||| ||||||||||||||||||||||||||| Sbjct 2235 ATGCGTCCAACAATAACCATTAGCGGTCGTTTTTATGGACAAGGATCGAGTTCTCAAGCT 2294 Query 85 GTTGGTTCTCAAAGACCTTTGTCTCAAACTGCAAACGCTGAATCAAGTGAGCAGAGAGAA 144 | ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2295 GCTGGTTATGAAAGACCTTTGTCTCAAACTGCAAACGTTGAATCAAGTGAGCAGAGAGAA 2354 Query 145 GAAATTGCACCTGTGCAATATGATATTCGAGTGCTTCACCCCTCTAGAAGAAATGGAGCT 204 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2355 GAAATTGCACATGTGCAATATGATATTCGAGTGCTTCACCCCTCTCGAAGAAATGGAGCT 2414 Query 205 AAATGGT 211 ||||||| Sbjct 2415 AAATGGT 2421 Score = 185 bits (100), Expect = 2e-46 Identities = 108/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 209 GGTTCAAAAACAACACCGAAGTGTCAACGCGTGTTAGAAAAATCATTGAAGAGTGTTTTC 268 |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 2502 GGTTCAAAAACAACACCGAAGTATCAACGCGTGTTAGAAAAATCATTGAAGGGTGTTTTT 2561 Query 269 AGGGACCTTGGTATAGCTGGAAAAAAGTGCCGCAATTTTATAGAGATGCATG 320 ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2562 AGGGACCTTGGTATAGCTGGAGAAAAGTGCCGCAATTTTATAGAGATGCATG 2613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14929521453 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5