BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890982

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28285.1 | Symbols:  | transposable element gene | chr5:1026...   291    4e-78


> AT5G28285.1 | Symbols:  | transposable element gene | chr5:10264891-10268620 
REVERSE LENGTH=3730
Length=3730

 Score =  291 bits (157),  Expect = 4e-78
 Identities = 177/187 (95%), Gaps = 0/187 (0%)
 Strand=Plus/Plus

Query  25    ATGCGTCCACCAATAAACATTGGCGGTCGTTTATATGGACAAGGATCGAGTTCTCAAGCT  84
             ||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct  2235  ATGCGTCCAACAATAACCATTAGCGGTCGTTTTTATGGACAAGGATCGAGTTCTCAAGCT  2294

Query  85    GTTGGTTCTCAAAGACCTTTGTCTCAAACTGCAAACGCTGAATCAAGTGAGCAGAGAGAA  144
             | ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  2295  GCTGGTTATGAAAGACCTTTGTCTCAAACTGCAAACGTTGAATCAAGTGAGCAGAGAGAA  2354

Query  145   GAAATTGCACCTGTGCAATATGATATTCGAGTGCTTCACCCCTCTAGAAGAAATGGAGCT  204
             |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  2355  GAAATTGCACATGTGCAATATGATATTCGAGTGCTTCACCCCTCTCGAAGAAATGGAGCT  2414

Query  205   AAATGGT  211
             |||||||
Sbjct  2415  AAATGGT  2421


 Score =  185 bits (100),  Expect = 2e-46
 Identities = 108/112 (96%), Gaps = 0/112 (0%)
 Strand=Plus/Plus

Query  209   GGTTCAAAAACAACACCGAAGTGTCAACGCGTGTTAGAAAAATCATTGAAGAGTGTTTTC  268
             |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| 
Sbjct  2502  GGTTCAAAAACAACACCGAAGTATCAACGCGTGTTAGAAAAATCATTGAAGGGTGTTTTT  2561

Query  269   AGGGACCTTGGTATAGCTGGAAAAAAGTGCCGCAATTTTATAGAGATGCATG  320
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  2562  AGGGACCTTGGTATAGCTGGAGAAAAGTGCCGCAATTTTATAGAGATGCATG  2613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5