BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890992
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, ... 2615 0.0
AT1G08300.1 | Symbols: NVL | no vein-like | chr1:2614774-261882... 697 0.0
> AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-,
and HSP90-like ATPase family protein | chr4:7975191-7987620
FORWARD LENGTH=8252
Length=8252
Score = 2615 bits (1416), Expect = 0.0
Identities = 1681/1808 (93%), Gaps = 21/1808 (1%)
Strand=Plus/Plus
Query 1 ATGCAAGGGAACCACGACGGTTCCTGGCCTCTAAACGCTTCCACGAATAGTGGAGTTCGT 60
||||||||||||||||||||||| ||| ||||| || | ||||| || | | |
Sbjct 1 ATGCAAGGGAACCACGACGGTTCGTGGTCTCTACACCCCTCCACCAACA----A-----T 51
Query 61 GGAAGCGGCAGAGGCAACGCAAACATCAACATCAACACCGTTCCCGGTGGAGGATACCTT 120
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 52 GGAAGCGGCAGAGCCAACGGAAACATCAACATCAACACCGTTCCCGGTGGAGGATACCTT 111
Query 121 CCTCAAACGAATCCTGTGTTTCCCAATTTCAATCAACCCATTGGATACTCC-CTGCCGCA 179
||||| | |||||||| |||||||||||||||||||||||| ||||| || | || ||
Sbjct 112 CCTCAGGCAAATCCTGTCTTTCCCAATTTCAATCAACCCATTAGATAC-CCAATTCCTCA 170
Query 180 ATTTCCGGCGAATTTTTACCGCCCTAATTTCCCTGACTTCTCACTCGGAAACCCTAATTT 239
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 171 GTTTCCGGCGAATTTTTACCGCCCTAATTTCCCTGACTTCTCTCTCGGAAACCCTAATTT 230
Query 240 CCAACCTCATCAGAATCTCAACTTCCATCATCAACAAATCCCTCACCAATTTGGGTCTGC 299
|||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||| || ||
Sbjct 231 CCAACCCCATCAAAATCTCAACTTCCTTCATCAACAAATCCCTCACCAATATGGCTCCGC 290
Query 300 CGCTAATCTCTTCCTTCAAAACCAT-ACTCAAAGCAGCTTCTCTTTCCCTCCTCAATCTC 358
||||||| |||||||||||||||| || |||| ||||||||||||||| |||||||||
Sbjct 291 TGCTAATCACTTCCTTCAAAACCATAAC-CAAAACAGCTTCTCTTTCCCACCTCAATCTA 349
Query 359 TTCCTAATAATGATATCAGTATCTCTCAGAATCACGGCGCTTTCGAAAGCTCTTCCTTGA 418
| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||
Sbjct 350 TACCTAATAATGATATCAGTATCTCTCAGAATCACGGAGCTTTCGAAAACTCTTCATTGA 409
Query 419 AACGAAGACGACAAGAGGAGG-AGGATGTTGTCGTCAGA-GAAGTTCCGAAATCTAATTT 476
||||||||||||||||||||| | | || | | || | ||||| |||||||||||
Sbjct 410 AACGAAGACGACAAGAGGAGGTTGTA-CAAGT-GACTGATGTGGTTCCAAAATCTAATTT 467
Query 477 TGTTTCCGGTGAGAGTGCTAATAATTCCTTCAGTGTTTCTCTACCGATCCCTATAGCAAC 536
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 468 TGCTTCCGGTGAGAGTGCTAATAACTCCTTCAGTGTATCTCTACCGATCCCTATAGCAAC 527
Query 537 TGATGATAGTGGTGTGTCTCGAGTCCATGGAGAGAAGTCATCCGCAAAACCAAAGCGAAA 596
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||
Sbjct 528 TGATGATAGTGGTGTGTCTCGAGTCCATGGAGAGAAGTCATCTGGAAAACCCAAGCGCAA 587
Query 597 AGTTGAAGTCTTGCGGATTGATAAAGCTGTGAACAAGACGCGTAAATCAGTTGTTGCTGC 656
|||||| ||||||||||||||||| ||||| |||||||||||||||| | ||||||||||
Sbjct 588 AGTTGATGTCTTGCGGATTGATAAGGCTGTTAACAAGACGCGTAAATTATTTGTTGCTGC 647
Query 657 TGGAGAGAGTGTATCTTCGACTAGAGTGTCGAGAGCGGTTCTCGAAGAACTTCAGGCTGA 716
|||||||||||| ||||||||||||||||||||||| ||| | ||||| ||||| |||||
Sbjct 648 TGGAGAGAGTGTTTCTTCGACTAGAGTGTCGAGAGCTGTTTTAGAAGAGCTTCAAGCTGA 707
Query 717 TTCTTGGCGTTCTTTGGGTGTGCAAATGCAAGATGTTCCTTCCCTTCGTCAACTAATGGC 776
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 708 TTCTTGGCGTTCCTTGGGTGTGCAAATGCAAGATGTTCCTTCTCTTCGTCAACTTATGGC 767
Query 777 CATTGAAGGAAAGATCAATGCATTTATTCACTGCTTCGTTGGGGCTAGAAGAATTGTGAC 836
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CATTGAAGGCAAGATCAATGCATTTATTCACTGCTTCGTTGGGGCTAGAAGAATTGTGAC 827
Query 837 ACTGCATGATTTGGAAGTGGCAATATGCCGGAACGAGTTTGTTGATTCTTTTGATGATTT 896
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 828 CCTGCATGATTTGGAAGTGGCAATATGCCGGAACGAGTTTGTTGATTCTTTCGATGATCT 887
Query 897 GGAATTGGGACCTTTGCTGCAGCATCCACTAGTCTTGCTGTATTTTCCATCCATATCTAG 956
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 888 GGAATTGGGACCTTTGCTGCAGCATCCACTGGTTTTGCTGTATTTTCCATCGATATCCAG 947
Query 957 CTCTACTGGCCCAGTTCAGATCACTAGTGAGGAGATAATATCATTTCTTGATAGCTATCT 1016
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TTCTACTGGACCAGTTAAGATCACTAGTGAGGAGATAATATCATTTCTTGATAGCTATCT 1007
Query 1017 GCACACTTATATGACAGAAGATGTTAAGCTCGATGAATTTCTGAATTTTGTTGCAAGCCA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1008 GCACACTTATATGACAGAAGATGTTAAGCTCGATGAATTTCTGAATTTTGTTGCAAGTCA 1067
Query 1077 AAAATCAGTTACAAGCAAGGAAAAGCTTGGTGTCCGTATTCAGAGCTTGCGGATGTATGT 1136
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1068 AAAGTCAGTTACAAGCAAGGAAAAGCTTGGTGTGCGTATTCAGAGCTTGCGGATGTATGT 1127
Query 1137 ATCTTTCATTCAAGACGCCAAAAGACAAGAAGGTGAAACATTGAAAGTCTTACTTACTGA 1196
||||||||||| |||||| || |||||||||||||||||| ||||||||||||| |||||
Sbjct 1128 ATCTTTCATTCTAGACGCGAAGAGACAAGAAGGTGAAACACTGAAAGTCTTACTGACTGA 1187
Query 1197 GCTGCATCAGAAGTATCAGATCCCCTCATCAAAGAAACAACGA-CAAGATAAACCCCTAA 1255
|||||||||||||||||| |||||||||||||||||||||| | | ||||||| | ||||
Sbjct 1188 GCTGCATCAGAAGTATCACATCCCCTCATCAAAGAAACAAC-AGCGAGATAAATCTCTAA 1246
Query 1256 CTGTCTCTGAGCGGGCTGACTCATTTGCTTTACATCATAAGGATTATTGTGGCAAGCATA 1315
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 CTGTCTCTGAGCGAGCTGACTCATTTGCTTTACATCATAAGGATTATTGTGGCAAGCATA 1306
Query 1316 TAAGATTTGATTCATCAAGCTCAGATGACAATGATAGTTG-TTATGAGGTTAGAAATAAG 1374
||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||
Sbjct 1307 TAAGATTTGATTCTTCAAGCTCAGATGAAAATGATA-ATGTTTATGAGGTTAGAAATCTT 1365
Query 1375 AATAGTTCTGACCATTTCAATAGTTGTCCATATCCATCTGTTGCGGAAGAGATGAAGCGG 1434
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 AATAGTTCTGACCATATCAATAGTTGTCCATATCCATCTGTTGCGGAAGAGATGAAGCGT 1425
Query 1435 CTTGGTGGCTCCAATAAGAAAAGGAAGGGTGAAAAACATAATCATGAAAAATCTGATTCG 1494
||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1426 CTTGGGGGCTCCAATAAGAAAAGGAAGGGTGAAAGACGTAATCATGAAAAATCTGATTCC 1485
Query 1495 TCCAAACTGCTTAGAAAATCCCCCTCTAAATTACAAGGACATGCGAAACAAGAGATACCT 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TCCAAACTGCTTAGAAAATCCCCCTCTAAATTACAAGGACATGCGAAACAAGAGATACCT 1545
Query 1555 AGATTGACTGATGATTCTGATGCTAAGAAGGTTTTCAGTGTCGATGAGGCTGATTTTACA 1614
| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1546 AAATTGGCTGATGATTCTGAAGCTAAGAAGGTTTTCAGTGTCGATGAGGCTGATTTTACA 1605
Query 1615 CTTTCTGAAGGAGATTTAAGATTGTTCATTTCAACTTGGAAGGACACATGTAAAGAGCTA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 CTTTCTGAAGGAGATTTAAGATTGTTCATTTCAACTTGGAAGGACACATGTAAAGAGCTA 1665
Query 1675 AGCATTTCAACGTTTGTCGAGAAAATGTTGTCTTTTTACAACTTGGGGGGCTCTGAAGGA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 AGCATTTCAACGTTTGTCGAGAAAATGTTGTCTTTTTACAACTTGGGGGGCTCTGAAGGA 1725
Query 1735 CGAGCTCAGATTAAAAGAGCTAAAGCAATGTCATCATTTCCGTTTGTTGGATTACTAAAT 1794
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1726 AGAGCTCAGATTAAAAGAGCTAAAGCGATGTCATCATTTCCGTTTGTTGGATTACTAAAT 1785
Query 1795 GTCGCTGT 1802
||||||||
Sbjct 1786 GTCGCTGT 1793
> AT1G08300.1 | Symbols: NVL | no vein-like | chr1:2614774-2618823
FORWARD LENGTH=2241
Length=2241
Score = 697 bits (377), Expect = 0.0
Identities = 558/644 (87%), Gaps = 18/644 (3%)
Strand=Plus/Plus
Query 613 ATTGATAAAGCTGTGAACAAGACGCGTAAATCAGTT-GTTGCTGCTGGAGAGAGTGTATC 671
|||||||| || || ||||| |||||||||||| || ||||||||||||| | |||||
Sbjct 379 ATTGATAAGGCCGTAAACAATACGCGTAAATCA-TTAATTGCTGCTGGAGACAACGTATC 437
Query 672 TTCGACTAGAGTGTCG-AGAGCGGTTCTCGAAGAACTTCAGGCTGATTCTTGGCGTT-CT 729
|||||||||||| ||| | | ||||| | | | ||||||||||||| ||||||||| ||
Sbjct 438 TTCGACTAGAGTTTCGCA-ATCGGTTTTAGCACAACTTCAGGCTGACACTTGGCGTTCCT 496
Query 730 TTGGG-TGTGCAAATGCAAGATGTTCCTTCCCTTCGTCAACTAATGGCCATTGAAGGAAA 788
| ||| | || ||||||||||||||||| ||||| ||||| |||||| ||||||| ||
Sbjct 497 TGGGGATATG--GATGCAAGATGTTCCTTCGCTTCGCCAACTCATGGCCCTTGAAGGCAA 554
Query 789 GATCAATGCATTTATTCACTGCTTCGTTGGGGCTAGAAGAATTGTGACACTGCATGATTT 848
||||| ||||||||||||||||||| |||| |||||| |||| |||||| ||||||||||
Sbjct 555 GATCATTGCATTTATTCACTGCTTCATTGGCGCTAGAGGAATCGTGACATTGCATGATTT 614
Query 849 GGAAGTGGCAATATGCCGGAACGAGTTTGTTGATTCTTTTGATGATTTGGAATTGGGACC 908
||||||||||||||||| ||||||||||||| || |||||||||| ||| |||||||||
Sbjct 615 GGAAGTGGCAATATGCCAAAACGAGTTTGTTGGTTGTTTTGATGATCTGGGATTGGGACC 674
Query 909 TTTGCTGCAGCATCCACTAGTCTTGCTGTATTTTCCATCCATATCTAGCTCTACTGGCCC 968
|||||||||||||||||| |||||||| |||||||||||| | | | | ||||||| |||
Sbjct 675 TTTGCTGCAGCATCCACTTGTCTTGCTCTATTTTCCATCCGTCTATTGTTCTACTGCCCC 734
Query 969 AGTTCAGATCACTAGTGAGGAGATAATATCATTTCTTGATAGCTATCTGCACACTTA-TA 1027
|||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 735 AGTTAAGATCACTAGTGAGGAGATAATATCATTACTTGATAGCTATCTAAACACTTACGA 794
Query 1028 TGACAGAAGATGTTAAGCTCGATGAATTTCTGAATTTTGTTGC-AAGCCAAAAATCAGTT 1086
| | || |||||||||||||||||||| ||| |||||||||| || | ||| |||||
Sbjct 795 T-ATTGACGATGTTAAGCTCGATGAATTCCTGGATTTTGTTGCTGAGGC-TAAAGCAGTT 852
Query 1087 ACAAGCAAGGAAAAGCTTGGTGTCCGTATTCAGAGCTTGCGGATGTATGTATCTTTCATT 1146
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 853 ACAAGCAAGGAAAAGCTTGGTGTCCGTATTCAGAACTTGCGGATGTATGTATCTTTCATT 912
Query 1147 CAAGACGCCAAAAGACAAGAAGGTGAAACATTGAA-AGTCTTACTT-ACTGAGCTGCATC 1204
||||| || || ||||||||||| |||| |||||| | || || || ||||| |||||||
Sbjct 913 CAAGATGCGAAGAGACAAGAAGGCGAAATATTGAAGA-TCGTA-TTGACTGAACTGCATC 970
Query 1205 AGAAGTATCAG-ATCCCCTCATCAAAGAAACAACGACAAGATAA 1247
||||||||| | |||| |||||||||||||||||| ||||||||
Sbjct 971 AGAAGTATC-GCATCCTCTCATCAAAGAAACAACGGCAAGATAA 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5