BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891002
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13660.1 | Symbols: ATPRR2, PRR2 | pinoresinol reductase 2 |... 1413 0.0
> AT4G13660.1 | Symbols: ATPRR2, PRR2 | pinoresinol reductase 2
| chr4:7946155-7948376 FORWARD LENGTH=1206
Length=1206
Score = 1413 bits (765), Expect = 0.0
Identities = 892/955 (93%), Gaps = 2/955 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGAGACTAATTTTGGCGAGAAAACGCGGGTTCTGGTGGTTGGTGGGACTGGATCG 60
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 129 ATGAAAGAGACTAATTTTGGCGAGAAAACGCGCGTTCTGGTAGTTGGTGGGACGGGATCA 188
Query 61 TTGGGGAGGAGGATCGTAACTGCGTGTTTGGCTGAGGGACACGAGACTTACGTTCTCCAG 120
|||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 189 TTGGGGAGGAGGATTGTAAGTGCGTGTTTGGCTGAGGGACACGAGACTTATGTTCTCCAG 248
Query 121 AGGCCGGAGAGCGGAGTGGACCTCGAGAAGGTGCAGCTTC-TCTATTCTTTCAAAAGACT 179
||||||||| ||||||||| |||||||||||||||| | ||| |||||||||||||||
Sbjct 249 CGGCCGGAGATTGGAGTGGACATCGAGAAGGTGCAGCTACTTCT-TTCTTTCAAAAGACT 307
Query 180 CGGCGCACATCTTGTCGAAGGCTCATTCTCCGATCACCAGAGCCTTGTCTCTGCCGTGAA 239
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 308 CGGCGCACATCTTGTGGAAGGCTCATTCTCCGATCACCAAAGCCTTGTCTCTGCCGTAAA 367
Query 240 GCAAGTCGATGTGGTTGTCTCCGCCATGTCCGGTGTCCATTTCCGCACCCACAACATCCC 299
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 368 GCAAGTCGACGTGGTTGTCTCCGCCATGTCCGGTGTCCACTTCCGCACCCACAACATCCC 427
Query 300 CGTTCAGCTCAAGCTCGTCAAAGCCATCAAAGAGGCTGGTAACGTCAAGCGGTTCTTACC 359
||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 428 CGTTCAGCTCAAGCTCGTCGCAGCCATCAAAGAGGCCGGTAACGTCAAGCGTTTCTTACC 487
Query 360 ATCAGAATTTGGAATGGATCCATCACGTATGGGACATGCCATGCCACCAGGAAGTGAAAC 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 488 ATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCCATGCCACCAGGAAGTGAAAC 547
Query 420 ATTCGATCAAAAAATGGAAGTACGAAATGCAATCGAGGCCGCGGGGATCCCCCACACATA 479
||| ||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||
Sbjct 548 ATTTGATCAAAAAATGGAAATACGAAATGCAATTAAGGCCGCCGGGATCTCCCACACATA 607
Query 480 TATCGTCGGTGCTTGTTTTGCCGCATACTTTGGCGGAAATTTATCTCAATTGGGAACTTT 539
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 608 CCTCGTCGGTGCTTGTTTTGCCGCATACTTCGGCGGAAATTTATCTCAAATGGGAACTTT 667
Query 540 GCTCCCTCCAAAAAAGACAGTTGATATTTATGGGGACGGAAATGTTAAAGTGGTATACGT 599
| ||||||| ||||| | |||||||||||||||||||||||||||||||||||| | |||
Sbjct 668 GTTCCCTCCGAAAAACAAAGTTGATATTTATGGGGACGGAAATGTTAAAGTGGTGTTCGT 727
Query 600 AGATGAAGATGACATGGCAAAATACGCCGCAAAGACGCTTAACGATCCCCGAACGATGAA 659
|||||||||||||||||||||||| | || ||||||||||| |||||||||||| ||||
Sbjct 728 AGATGAAGATGACATGGCAAAATATACAGCGAAGACGCTTAATGATCCCCGAACGTTGAA 787
Query 660 TAAAACAGTGTATGTTAGGCCTACCGACAACATTCTCACACATATGGAACTAGTTCAGAT 719
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 788 TAAAACTGTGTATGTTAGACCTACCGACAACATTCTCACACAAATGGAACTAGTTCAGAT 847
Query 720 ATGGGAGAAACTAAGTGGGAAAGAGTTGGAGAAGAACTATGTCTCAGCAAAAGACTTTCT 779
|||||||||||||| | |||||||||||||||| |||||| |||| ||| ||||||||
Sbjct 848 ATGGGAGAAACTAACCGAAAAAGAGTTGGAGAAGACCTATGTTTCAGGAAACGACTTTCT 907
Query 780 TGCTGACATTGAAGATAAGGAGATACCACACCAAGCGGGAGTAGGACACTTTTATCACAT 839
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 908 TGCTGACATTGAAGATAAGGAGATATCACACCAAGCGGGACTAGGACACTTTTATCACAT 967
Query 840 ATACTACGAAGGTTGTCTCACAGATCATGAAGTTGGAGACGACGAAGAAGCTTCTAAACT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 968 ATACTACGAAGGTTGTCTCACAGATCATGAAGTTGGAGACGACGAAGAAGCTACTAAACT 1027
Query 900 CTATCCGGAGGTGAAGTATACACGCATGGATGAATATTTGAAAATTTTCGTATAA 954
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1028 CTATCCGGATGTGAAGTACAAACGCATGGATGAATATTTGAAAATTTTCGTATAA 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5