BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891006
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13640.2 | Symbols: UNE16 | Homeodomain-like superfamily pro... 1325 0.0
> AT4G13640.2 | Symbols: UNE16 | Homeodomain-like superfamily protein
| chr4:7936606-7938645 REVERSE LENGTH=1294
Length=1294
Score = 1325 bits (717), Expect = 0.0
Identities = 833/890 (94%), Gaps = 4/890 (0%)
Strand=Plus/Plus
Query 1 ATGTACTCAGCGATTCATTCATCGCTTCCTCTAGATGGCAACTTGGGAGAGTACTCTGAC 60
|||||||| ||||||| || ||||||||||||||||||| ||||||||| |||||||||
Sbjct 149 ATGTACTCGGCGATTCGGTCTTCGCTTCCTCTAGATGGCAGCTTGGGAGACTACTCTGAC 208
Query 61 GGAACTAATCTTCCCATCGACGCTTGTTTGGTCCTAACCACTGACCCCAAACCTCGCCTT 120
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 209 GGAACCAATCTTCCCATCGACGCTTGTCTGGTCCTAACCACTGACCCCAAGCCTCGCCTT 268
Query 121 CGTTGGACCTCTGAGCTCCATGAAAGATTCGTTGACGCCGTCACTCAGCTCGGCGGACCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CGTTGGACCTCTGAGCTCCATGAAAGATTCGTTGACGCCGTCACTCAGCTCGGCGGACCC 328
Query 181 GACAAAGCAACGCCAAAAACTATAATGAGAACGATGGGAGTGAAGGGTCTCACTCTTTAC 240
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 329 GACAAAGCAACGCCTAAAACTATAATGAGAACAATGGGAGTGAAGGGTCTCACTCTTTAC 388
Query 241 CATCTTAAATCTCATCTTCAGAAATTTCGTCTAGGG-AGGCAATCTTGTAAAGAATCAGT 299
||||| |||||||||||||||||||| || || ||| ||||||||||||||||||||| |
Sbjct 389 CATCTCAAATCTCATCTTCAGAAATTCCG-CTTGGGGAGGCAATCTTGTAAAGAATCAAT 447
Query 300 TGACAACTCTAAGGATGTTTCTTGTGTTGCGGAGAGTCAGGACACTAGTTCATCGTCAAC 359
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 448 TGACAACTCTAAGGATGTTTCTTGTGTTGCGGAGAGTCAGGACACTGGTTCATCTTCAAC 507
Query 360 TTCATCGTTAAGAATGGCTGCGCAGGAACAGAATGAGAGTTACCAGGTCACCGAAGCTTT 419
||||| |||||| ||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 508 ATCATCCTTAAGATTGGCTGCTCAAGAACAGAACGAGAGTTACCAGGTCACTGAAGCTTT 567
Query 420 GCGTGCCCAGATGGAAGTCCAAAGAAGATTACACGAGCAATTAGAGTATGCGCAGGTGCA 479
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 568 GCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAGCAACTAGAGTATACGCAGGTGCA 627
Query 480 AAGGCGACTCCAGCTAAGGATCGAGGCACAAGGAAAGTACTTGCAATCAGTTCTAGAGAA 539
||||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 628 AAGGCGACTCCAGTTAAGGATCGAGGCACAAGGGAAGTACCTGCAATCAATTCTAGAGAA 687
Query 540 AGCTTGCAAGGCTATAGAGGAACAAGCTGTTGCGTTTGCTGGGCTAGAAGCGGCTAGAGA 599
||||||||||||||||||||| ||||||||||| ||||||||| |||| || ||||||||
Sbjct 688 AGCTTGCAAGGCTATAGAGGAGCAAGCTGTTGCATTTGCTGGGTTAGAGGCAGCTAGAGA 747
Query 600 AGAGCTTTCAGAGCTGGCCATAAAAGTCTCCATCACCAATGGATGCCAAGGCACAACAAG 659
||||||||||||||| |||||||| | ||||||||||||||| |||||||| ||||||||
Sbjct 748 AGAGCTTTCAGAGCTAGCCATAAAGGCCTCCATCACCAATGGGTGCCAAGGAACAACAAG 807
Query 660 CACATTCGACACAACCAAAATGAC-ACTTCCATCCTTATCCGAGCTTGCAGTAGCGATAG 718
||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct 808 CACCTTCGACACAACCAAAATGATGA-TTCCATCCTTATCCGAGCTTGCAGTAGCAATAG 866
Query 719 AGCACAAGAACAACTGTTCAGCAGAGAGCTCTCTGACGTCCAGCACTGTGGGAAGTCCGG 778
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 867 AGCACAAGAACAACTGTTCAGCAGAGAGCTCTCTGACTTCCAGCACTGTAGGAAGTCCGG 926
Query 779 TTTCAGCTGCTTTGATGAAGAAGAGGCAACGAGGAGTGTTTGGAAACGGAGATAGTGTGG 838
| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 927 TATCAGCTGCGTTGATGAAGAAGAGACAACGAGGAGTGTTTGGAAATGGAGATAGTGTGG 986
Query 839 TTGTTGGTCATGAAGTTGGATGGGTTATGCCTAGTAGCAGCATTGGATGA 888
||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 987 TTGTTGGTCATGATGCTGGATGGGTTATGCCTAGTAGTAGCATTGGATGA 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5