BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891021
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32750.1 | Symbols: HAF01, HAF1, HAC13, GTD1, TAF1 | HAC13 p... 737 0.0
AT3G19040.1 | Symbols: TAF1, TAF1B, HAF2 | histone acetyltransf... 564 3e-160
> AT1G32750.1 | Symbols: HAF01, HAF1, HAC13, GTD1, TAF1 | HAC13
protein (HAC13) | chr1:11846247-11856765 REVERSE LENGTH=6190
Length=6190
Score = 737 bits (399), Expect = 0.0
Identities = 437/456 (96%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 1 ATGTTCTATATGGGAAAGGAACTTGAGGATGAAAAGTCTCTTGCTGCACAAAATGTTCAA 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2402 ATGTTCTATAAGGGAAAGGAACTTGACGATGAAAAGTCTCTTGCTGCACAAAATGTTCAA 2461
Query 61 CCAAATTCCTTGGTTCATCTTATACGTAGTAAAGTACATATGTGGCCATGGGCACAGAGG 120
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
Sbjct 2462 CCAAATTCCTTGGTTCATCTTATACGTACTAAAGTACATCTGTGGCCATGGGCACAGAAG 2521
Query 121 CTACCTGGCGAAAATAAATCTTTGAGACCTCATGGGGCATTCAAAAAGAAATCTGACTTA 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2522 CTACCTGGCGAAAATAAATCTTTGAGACCTCCTGGGGCATTCAAAAAGAAATCTGACCTA 2581
Query 181 TCTACTAAAGATGGCCATGTTTTCTTGATGGAGTACTGCGAGGAGAGGCTGCTGATGCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2582 TCTACTAAAGATGGCCATGTTTTCTTGATGGAGTACTGCGAGGAGAGGCCGCTGATGCTC 2641
Query 241 AACAATGCAGGAATGGGTGCAAATTTGTGCACATATTATCAGAAGTCATCCCCAGAGGAT 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2642 AGCAATGCAGGAATGGGTGCAAATTTGTGCACATATTATCAGAAGTCATCCCCTGAGGAT 2701
Query 301 CAACGTGGCAACTGGCTGCACAATCAAAGTGACACCTTAGGGAATGTGATGATTCTAGAA 360
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2702 CAACGTGGCAACTTGCTGCGCAATCAAAGTGACACCTTAGGGAATGTGATGATTCTAGAA 2761
Query 361 CCTGGGGACAAGTGTCCTTTCCTTGGGGAGATACATGTTGGTTGCAGTCAGTCATTTGTT 420
||||||||||| | ||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 2762 CCTGGGGACAAATCTCCTTTCCTTGGGGAGATACACGCTGGTTGCAGTCAGTCATCTGTT 2821
Query 421 GAAACAAACATGTATAAAGCACCTATTTTTCCACAG 456
|||||||| ||||||||||||||||||||||| |||
Sbjct 2822 GAAACAAATATGTATAAAGCACCTATTTTTCCGCAG 2857
> AT3G19040.1 | Symbols: TAF1, TAF1B, HAF2 | histone acetyltransferase
of the TAFII250 family 2 | chr3:6567157-6575282 REVERSE
LENGTH=5361
Length=5361
Score = 564 bits (305), Expect = 3e-160
Identities = 406/455 (89%), Gaps = 6/455 (1%)
Strand=Plus/Plus
Query 1 ATGTTCTATATGGGAAAGGAACTTGAGGATGAAAAGTCTCTTGCTGCACAAAATGTTCAA 60
||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1849 ATGTTTTATATGGGGAAGGAACTTGAGGATGAAAAGTCTCTTGCTGAACAAAATGTTCAA 1908
Query 61 CCAAATTCC-TTGGTTCATCTTATACGTAGTAAAGTACATATGTGGCCATGGGCACAGAG 119
|| |||||| ||| | |||||| |||||| ||| || ||| |||||||||||||||| |
Sbjct 1909 CCCAATTCCCTTG-TCCATCTTTTACGTACTAAGGTGCATCTGTGGCCATGGGCACAAAA 1967
Query 120 GCTACCTGGCGAAAATAAATCTTTGA-GACCTCATGGGGCATTCAAAAAGAAATCTGACT 178
||| |||||||||||||||||||| | |||||| |||||| ||||| ||||||||||||
Sbjct 1968 GCTTCCTGGCGAAAATAAATCTTT-ACGACCTCCTGGGGCTTTCAAGAAGAAATCTGACC 2026
Query 179 TATCTACTAAAGATGGCCATGTTTTCTTGATGGAGTACTGCGAGGAGAGGCTGCTGATGC 238
|||||| | |||||||||||||||||||||||||||| || || ||||||| | ||||||
Sbjct 2027 TATCTAATCAAGATGGCCATGTTTTCTTGATGGAGTATTGTGAAGAGAGGCCGTTGATGC 2086
Query 239 TCAACAATGCAGGAATGGGTGCAAATTTGTGCACATATTATCAGAAGTCATCCCCAGAGG 298
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2087 TCAGCAATGCAGGAATGGGTGCAAATTTGTGCACGTATTATCAGAAGTCATCCCCAGAGG 2146
Query 299 ATCAACGTGGCAACTGGCTGCACAATCAAAGTGACACCTTAGGGAATGTGATGATTCTAG 358
|||||| ||| |||| ||||| |||||||||||| |||||||||| |||||| |||||||
Sbjct 2147 ATCAACATGGGAACTTGCTGCGCAATCAAAGTGATACCTTAGGGAGTGTGATTATTCTAG 2206
Query 359 AACCTGGGGACAAGTGTCCTTTCCTTGGGGA-GATACATGTTGGTTGCAGTCAGTCATTT 417
||| |||| |||| | |||||||||||||| | |||| | ||||||||||||||||| |
Sbjct 2207 AACATGGGAACAAATCCCCTTTCCTTGGGGAAG-TACACGGTGGTTGCAGTCAGTCATCT 2265
Query 418 GTTGAAACAAACATGTATAAAGCACCTATTTTTCC 452
||||||||||||||||| ||||||||| |||||||
Sbjct 2266 GTTGAAACAAACATGTACAAAGCACCTGTTTTTCC 2300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21866470815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5