BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891028
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44810.1 | Symbols: | DNA-binding storekeeper protein-relat... 708 0.0
AT4G00250.1 | Symbols: | DNA-binding storekeeper protein-relat... 335 4e-91
AT4G00238.1 | Symbols: | DNA-binding storekeeper protein-relat... 316 1e-85
> AT1G44810.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr1:16923543-16924821 FORWARD
LENGTH=1279
Length=1279
Score = 708 bits (383), Expect = 0.0
Identities = 604/705 (86%), Gaps = 38/705 (5%)
Strand=Plus/Plus
Query 38 ATTCTGACTCAGATAAGCCAATCGTCTTCACCAAG-CAGATGAGGATGGAAGCTACTGAT 96
|||| ||||||||||||||||||||||| ||| || |||| || || |||| |||||||
Sbjct 293 ATTCCGACTCAGATAAGCCAATCGTCTTAACC-AGTCAGAAGAAGAAAGAAGGTACTGAT 351
Query 97 TCACCGGCGGTGAAATCAGTGAAGAAGCGAGCTAGTGAAGGAACCACCTCGAAGGACATC 156
| | ||||| || ||||||||||||||||||||| | ||| |||||||||
Sbjct 352 T------C------ATCAGGGACGAAGCGAGCTAGTGAAGGAACTAGCTCAAAGGACATC 399
Query 157 AAAAGAGCTAAGAAAGTTTCAGGCGACAACGATAACAAAAAGCCGCATTTACATAGATTA 216
||||||||||||||||||||||| || ||||||||||||| |||| || || |||
Sbjct 400 AAAAGAGCTAAGAAAGTTTCAGGAGATGACGATAACAAAAA-----ATTT-CAGAGTTTA 453
Query 217 TGGACTGAAGAAGATGAGA--TCTCTGTTACAAGAAACATGATTGATTTCAAAGCTGAGA 274
|||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 454 TGGACTAAAGAAGATGAGATCTCTCTGTTACAAG--GTATGATTGATTTCAAAGCTGAGA 511
Query 275 CAGGTACAAGTCCTTATGATGATATGAATAAGTTTTTCGATATCGCTAAGAAAT-CTATA 333
||||||||||| || |||||||||||||| |||||| ||||| ||||||| || | |||
Sbjct 512 CAGGTACAAGTGCTCATGATGATATGAATGGGTTTTTTGATATTGCTAAGAGATAC-ATA 570
Query 334 AGCTTTGATGTTAGTAAGAGTC-AGTTTGGTGACAAGATTAGAGGTTTAAAGAACAAGTA 392
||||||||||||||||||| || | || |||||||||||||||||||||||||| |||||
Sbjct 571 AGCTTTGATGTTAGTAAGA-TCCAATTCGGTGACAAGATTAGAGGTTTAAAGAAGAAGTA 629
Query 393 TTTTGGTA-AACGGAAGAAGAAAAGTGTT-GAATCCGATCATGATAAGAAATGTTTGGAA 450
||||||| || ||||||||||| || || || | |||||||||||||||||||||| |
Sbjct 630 TTTTGGTGTAA-GGAAGAAGAAAGGT-TTAGACTTGGATCATGATAAGAAATGTTTGGGA 687
Query 451 TTGGCTAAGTCTATTTGGGGATCT-GAAGATAAGGAAGTGGTGATTCTTGGAGGAGATTC 509
||||||||||||||||||||| || || | ||||||||||||| ||||||||||||||||
Sbjct 688 TTGGCTAAGTCTATTTGGGGA-CTTGATGGTAAGGAAGTGGTGGTTCTTGGAGGAGATTC 746
Query 510 GGAGTGGTCGAATTGGTTTGAGAAGTCTTTTTTGGTTCGGGTTATTGTGAGTCTCGGTAT 569
|||| ||||||||||||||||||||| ||||||||||||||| ||| ||| || ||| |
Sbjct 747 GGAGACGTCGAATTGGTTTGAGAAGTCGTTTTTGGTTCGGGTTGTTGCGAGGCTTGGTGT 806
Query 570 GGATGAGTGTTTTGTGAAGTGGAAATGGAGTAAGGTGCCTGTGGAGATTAAGAAGAAGAT 629
|||||||||| |||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 807 GGATGAGTGTATTGTGAAGTGGAAATGGAGTAAGGTGTCTAAGGAGACTAAGAAGAGGAT 866
Query 630 TGAAGAAAAGATGAAGATGGTTGAAGG-TAAGGAATTTCAGTTGTTGTCACTGAAGATTG 688
|||||| |||||||||||||| || || ||||||| || |||||||||| | |||||| |
Sbjct 867 TGAAGAGAAGATGAAGATGGTGGA-GGCTAAGGAACTTGAGTTGTTGTCGCAGAAGATAG 925
Query 689 ATGTTTTGAAGGAGGTGACTTC-GTTGATTGCTGAAACCAACTAA 732
||||||||||||||||| |||| || |||||||||||| | ||||
Sbjct 926 ATGTTTTGAAGGAGGTGGCTTCTGT-GATTGCTGAAACTATCTAA 969
> AT4G00250.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:112705-113966 REVERSE
LENGTH=1262
Length=1262
Score = 335 bits (181), Expect = 4e-91
Identities = 370/455 (81%), Gaps = 37/455 (8%)
Strand=Plus/Plus
Query 42 TGACTCAGATAAGC---CAATCGTCTTCACCAAGCAGATGAGGATGGAA---GCTACTGA 95
||||||||| |||| || ||||||| |||| || || || || ||| ||| ||||
Sbjct 233 TGACTCAGAGAAGCAGTCATTCGTCTTAACCAGGCGGAAGAAGAAAGAAGGTGCTGCTGA 292
Query 96 TTCACCGGCGGTGAAATCAGTGAAGAAGCGAGCTAGTGAAGGAACCACCTCGAA-GG--A 152
|||||||||||||| |||| ||||||||||||| ||||||||| |||||| || || |
Sbjct 293 ATCACCGGCGGTGAAGTCAGGGAAGAAGCGAGCTGGTGAAGGAAGCACCTC-AAGGGACA 351
Query 153 --CA--TCAAAAGAGCTAAGAAAGTTTCAGGCGACAACGATAACAAAAAGCCGCAT-TTA 207
|| ||||||||| |||||||| | | | |||||||||||||| || || |
Sbjct 352 TGCATGTCAAAAGAGTTAAGAAAG----A-G-G---ACGATAACAAAAAGGCGAATCCT- 401
Query 208 CATAGATTATGGACTGAAGAAGATGAGATCTCTGTTACAAGAAACA-TGATTGATTTCAA 266
|| ||| |||||| ||||||||||||||||||| || | | | || |||||||||||||
Sbjct 402 CAGAGAGTATGGAGTGAAGAAGATGAGATCTCTCTT-CTACAGGCAGTGATTGATTTCAA 460
Query 267 AGCTGAGACAGGTACAAGTCCTTATGATGATATGAATAAGTTTTTCGATATCGCTAAGAA 326
||||||||||||||||||||||| ||| ||| |||| |||||| |||||||| |||||
Sbjct 461 AGCTGAGACAGGTACAAGTCCTTGGGATCATAAGAATGCGTTTTTTGATATCGCCAAGAA 520
Query 327 ATCTATAAGCTTTGATGTTAGTAAGAGTC-AGTT-TGGTGACAAGATTAGAGGTTTAAAG 384
|||||||||||||||||||||| | ||| |||| | ||||||||||||| | ||||||
Sbjct 521 ATCTATAAGCTTTGATGTTAGTCAT-GTCCAGTTCTT-TGACAAGATTAGAAGATTAAAG 578
Query 385 AACAAGTATTTTGGTAAACGGAAGAAGAAAAGTGTTGAATCCGA-TCATGATAAGAAATG 443
|| |||||||||| ||| |||||||| ||||||| |||||| || |||||||||||||||
Sbjct 579 AATAAGTATTTTGTTAACCGGAAGAACAAAAGTGGTGAATC-GAATCATGATAAGAAATG 637
Query 444 TTTGGAATTGGCTAAGTCT--ATTTGGGGATCTGA 476
||||| |||||| || | ||||||||||||||
Sbjct 638 TTTGGGTTTGGCT--GTTTTGATTTGGGGATCTGA 670
> AT4G00238.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:103823-105217 REVERSE
LENGTH=1395
Length=1395
Score = 316 bits (171), Expect = 1e-85
Identities = 331/403 (82%), Gaps = 31/403 (8%)
Strand=Plus/Plus
Query 88 GCTACTGATTCACCGGCGGTGAAATCAGTGAAGAAGCGAGCTAGTGAAGGAACCACCTCG 147
|||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||| ||
Sbjct 392 GCTACTGAATCACCGGCGGTGAAGTCAGGGAAGAAGCGAGCTAGCGAAGGAACCACGTC- 450
Query 148 AA-GG--A--CA--TCAAAAGAGCTAAGAAAGTTTCAGGCGACAACGATAACAAAAAGCC 200
|| || | || |||||||| |||||||| ||| | |||||||||||||
Sbjct 451 AAGGGACATGCATGTCAAAAGAATTAAGAAAG----AGG-G----CGATAACAAAAAGGG 501
Query 201 GCAT-TTACATAGATTATGGACTGAAGAAGATGAGATCTCTGT--TACAAGAAACATGAT 257
|||| | || ||| |||||| ||||||||| ||||||||| | | |||| | |||||
Sbjct 502 GCATGCT-CAGAGAGTATGGAGTGAAGAAGACGAGATCTCTCTCCTGCAAG-CA-ATGAT 558
Query 258 TGATTTCAAAGCTGAGACAGGTACAAGTCCTTATGATGATATGAATAAGTTTTTCGATAT 317
||||||||||||||||||||||||||||||| ||| ||| | ||| |||||| |||||
Sbjct 559 CGATTTCAAAGCTGAGACAGGTACAAGTCCTTGGGATCATAAGGATAGGTTTTTTGATAT 618
Query 318 CGCTAAGAAATCTATAAGCTTTGATGTTAGTAAGAGTC-AGTT-TGGTGACAAGATTAGA 375
||| ||||||||||||||||||||||||||||| |||| |||| | |||||||||||||
Sbjct 619 CGCCAAGAAATCTATAAGCTTTGATGTTAGTAA-AGTCCAGTTCTT-TGACAAGATTAGA 676
Query 376 GG-TTTAA-AGAACAAGTATTTTGGTAAACGGAAGAAGAAAAGTGTTGAATCCGATCATG 433
| ||||| |||| | |||||||||| | |||||| || |||||||||||| |||||||
Sbjct 677 AGCTTTAAGAGAA-A-GTATTTTGGTGACCGGAAGGTGAGAAGTGTTGAATCGGATCATG 734
Query 434 ATAAGAAATGTTTGGAATTGGCTAAGTCTATTTGGGGATCTGA 476
||||||| ||||||| |||||| ||| |||||||||||||
Sbjct 735 ATAAGAAGTGTTTGGGTTTGGCTGTTTCTTTTTGGGGATCTGA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5