BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891031

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04408.1 | Symbols:  | pseudogene, similar to Putative histo...   339    1e-92
  AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885...   333    5e-91


> AT4G04408.1 | Symbols:  | pseudogene, similar to Putative histone 
H2A, blastp match of 79% identity and 3.0e-31 P-value to 
GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza 
sativa (japonica cultivar-group)} | chr4:2184059-2184400 
REVERSE LENGTH=342
Length=342

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 239/267 (90%), Gaps = 0/267 (0%)
 Strand=Plus/Plus

Query  1    TTTCCACTGGGTCGTATTCACAGGCAACTCAAGACCAAAGTTTCTCCACATGGTAGAGTT  60
            |||||| ||| ||||||||||| |||||| ||||||| ||||||| |||||||||  |||
Sbjct  61   TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT  120

Query  61   GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT  120
            ||||| |||| || |||||||||| ||||||||||||||| |||||||||  ||||||||
Sbjct  121  GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT  180

Query  121  GACTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCAAGACATTTG  180
             | ||||| | |||| | | ||| ||| ||||||||||||||||||||||||| ||||||
Sbjct  181  CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG  240

Query  181  CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA  240
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  241  CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA  300

Query  241  GGAGGTGTGATCCCTCACATCCACTAG  267
            |||||||||||||||||||||||||||
Sbjct  301  GGAGGTGTGATCCCTCACATCCACTAG  327


> AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982 
FORWARD LENGTH=759
Length=759

 Score =  333 bits (180),  Expect = 5e-91
 Identities = 238/267 (89%), Gaps = 0/267 (0%)
 Strand=Plus/Plus

Query  1    TTTCCACTGGGTCGTATTCACAGGCAACTCAAGACCAAAGTTTCTCCACATGGTAGAGTT  60
            |||| | ||| ||||||||||| |||||| |||| || ||||||| ||||| |||| |||
Sbjct  175  TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT  234

Query  61   GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT  120
            ||||| |||| || |||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct  235  GGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCTT  294

Query  121  GACTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCAAGACATTTG  180
             | ||||| | |||| | ||||||||| | ||||||||||||||||||||||| ||||||
Sbjct  295  CAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG  354

Query  181  CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA  240
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||
Sbjct  355  CAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGA  414

Query  241  GGAGGTGTGATCCCTCACATCCACTAG  267
            ||| |||||||||||||||||||||||
Sbjct  415  GGAAGTGTGATCCCTCACATCCACTAG  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5