BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891032

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885...   174    4e-43
  AT4G04408.1 | Symbols:  | pseudogene, similar to Putative histo...   169    2e-41


> AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982 
FORWARD LENGTH=759
Length=759

 Score =  174 bits (94),  Expect = 4e-43
 Identities = 135/155 (87%), Gaps = 2/155 (1%)
 Strand=Plus/Plus

Query  177  ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTGATGCCACTGCTGATGTCTACACGGC  236
            ||| |||| |||||||||||||||| |||| |||| ||| |||| || |||||||| | |
Sbjct  201  ACTTAAGAACAGAGTTTCTGCACATAGTAGTGTTGGTGCGACTGATGTTGTCTACATGAC  260

Query  237  TTCAATCCTTGAATACCTAACTACAAAGGTTCTTGAGTTGGCTGGAAGA-GCGAGCAAAG  295
            ||||||||||||||||||||||||| |||||||| |||||||  ||| |  | |||||||
Sbjct  261  TTCAATCCTTGAATACCTAACTACAGAGGTTCTTCAGTTGGC-CGAAAACACTAGCAAAG  319

Query  296  ATCTGAAAGTGAAGAGGATAACTCCAAGGCATTTG  330
            || | ||||||||||||||||||||||||||||||
Sbjct  320  ATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG  354


> AT4G04408.1 | Symbols:  | pseudogene, similar to Putative histone 
H2A, blastp match of 79% identity and 3.0e-31 P-value to 
GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza 
sativa (japonica cultivar-group)} | chr4:2184059-2184400 
REVERSE LENGTH=342
Length=342

 Score =  169 bits (91),  Expect = 2e-41
 Identities = 134/155 (86%), Gaps = 2/155 (1%)
 Strand=Plus/Plus

Query  177  ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTGATGCCACTGCTGATGTCTACACGGC  236
            ||| |||||||||||||||||||||||||  |||| ||| |||| || |||||||||| |
Sbjct  87   ACTTAAGACCAGAGTTTCTGCACATGGTACTGTTGGTGCGACTGATGTTGTCTACACGAC  146

Query  237  TTCAATCCTTGAATACCTAACTACAAAGGTTCTTGAGTTGGCTGGAAGA-GCGAGCAAAG  295
            |||||||||||||| |||||||||  |||||||| |||||||  ||| |  | | ||| |
Sbjct  147  TTCAATCCTTGAATGCCTAACTACTGAGGTTCTTCAGTTGGC-CGAAAACACTAACAAGG  205

Query  296  ATCTGAAAGTGAAGAGGATAACTCCAAGGCATTTG  330
            || ||||||||||||||||||||||||||||||||
Sbjct  206  ATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5