BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891033
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 444 4e-124
AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 433 8e-121
AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 316 8e-86
AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 307 5e-83
> AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768
Score = 444 bits (240), Expect = 4e-124
Identities = 310/342 (91%), Gaps = 11/342 (3%)
Strand=Plus/Plus
Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTAATCTAAG-CAAGTGGTTTTCGAGTTA 59
|||| ||||||| |||||||||||||||||||| ||||||| ||| |||| ||||||||
Sbjct 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATTGTCTTGA------GTTTCTTGAAGA 113
||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||
Sbjct 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548
Query 114 AAGTAAAGGTACAAAAGAAATGGAATTAGTCTCTTCTCATGCTAAAGACATGTCTCAATT 173
||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||| |||
Sbjct 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTC-ATT 607
Query 174 -GCAGGTTGAGTTTTCAGAAGGTATAATGAATCTCGTCGTTGAGGACAGTGACATAGATG 232
|||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 608 CGCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATG 667
Query 233 AAGACTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTA 292
||||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 668 AAGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTA 726
Query 293 AGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAACTAA 334
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 727 AGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768
> AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G07526.3);
Has 57 Blast hits to 57 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14082795-14084346
REVERSE LENGTH=765
Length=765
Score = 433 bits (234), Expect = 8e-121
Identities = 320/361 (89%), Gaps = 8/361 (2%)
Strand=Plus/Plus
Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTAATCTAAG-CAAGTGGTTTTCGAGTTA 59
|||| ||||||| |||||||||||||||||||| ||||||| ||| |||| |||||||||
Sbjct 403 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTA 461
Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATTGTCTT--G--AG--TTTCTTGAAGA 113
| ||||||||||||||||| |||||||||||||| ||||| | | ||||||| |||
Sbjct 462 TATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGA 521
Query 114 AAGTAAAGGTACAAAAGAAATGGAATTAGTCTCTTCTCATGCTAAAGACATGTCTCAATT 173
||||||| ||| ||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 522 AAGTAAAAGTATAAAGGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTC 581
Query 174 GCAGGTTGAGTTTTCAGAAGGTATAATGAATCTCGTCGTTGAGGACAGTGACATAGATGA 233
|| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 582 CCAAATTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 641
Query 234 AGACTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAA 293
|||| |||| |||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 642 AGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCAATGTTTTCCGAAAACCTAA 701
Query 294 GAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAACTAACTTCCTTGAAGAATCGAGT 353
||||||||| |||||||||||||||||||||||||| |||| || ||||||||| |||||
Sbjct 702 GAGAAAGGATGAGACTACAACAACCTATGAAGCTGAGCTAAATTACTTGAAGAACCGAGT 761
Query 354 C 354
|
Sbjct 762 C 762
> AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G07526.3);
Has 32 Blast hits to 32 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15738173-15738616
REVERSE LENGTH=264
Length=264
Score = 316 bits (171), Expect = 8e-86
Identities = 213/233 (91%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 103 TTTCTTGAAGAAAGTAAAGGTACAAAAGAAATGGAATTAGTCTCTTCTCATGCTAAAGAC 162
||||||| ||||| |||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 34 TTTCTTGGAGAAATTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTGAGGCTAAAGAT 93
Query 163 ATGTCTCAATTGCAGGTTGAGTTTTCAGAAGGTATAATGAATCTCGTCGTTGAGGACAGT 222
|||||||| | ||| |||||||||||||||| ||| ||||||||||||||||| || |||
Sbjct 94 ATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTGAAGAAAGT 153
Query 223 GACATAGATGAAGACTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTT- 281
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 154 GAGATAGATGAAGACTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAG-AGTATTTTC 212
Query 282 TCGAAAACCTAAGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAACTAA 334
| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 213 T-GAAAACATAAAAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 264
> AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 40 Blast hits to 40 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11693095-11693622
REVERSE LENGTH=435
Length=435
Score = 307 bits (166), Expect = 5e-83
Identities = 198/214 (93%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 103 TTTCTTGAAGAAAGTAAAGGTACAAAAGAAATGGAATTAGTCTCTTCTCATGCTAAAGAC 162
||||||| ||||||||| |||||||| |||||| |||||||||||||| ||||||||||
Sbjct 34 TTTCTTGGAGAAAGTAATGGTACAAAGGAAATGAAATTAGTCTCTTCTGATGCTAAAGAT 93
Query 163 ATGTCTCAATTGCAGGTTGAGTTTTCAGAAGGTATAATGAATCTCGTCGTTGAGGACAGT 222
|||||||| | ||| |||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 94 ATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATATTGTGAATCTCGTCGTTGAAGACAGT 153
Query 223 GACATAGATGAAGACTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTT 282
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 GAGATAGATGAAGATTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTC 213
Query 283 CGAAAACCTAAGAGAAAGGAAGAGACTACAACAA 316
||||||||||||||||||||||||||||||||||
Sbjct 214 CGAAAACCTAAGAGAAAGGAAGAGACTACAACAA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20207635098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5