BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891034
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885... 326 9e-89
AT4G04408.1 | Symbols: | pseudogene, similar to Putative histo... 326 9e-89
> AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982
FORWARD LENGTH=759
Length=759
Score = 326 bits (176), Expect = 9e-89
Identities = 236/266 (89%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 31 TTTCCAGTGGTTCGTATTCATAGGCAACTCAAGACCAGAGTTTCTGCATATGGTAGAGTT 90
|||| ||||| ||||||||| | |||||| |||| ||||||||||||| || |||| |||
Sbjct 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234
Query 91 GGTGCCACTTCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 150
||||| ||| || |||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 235 GGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCTT 294
Query 151 GAGTTGGCTGGCAACGCGAGCAAAGATCTGGAAGTGAAGAGGATAACTCCAAGGCATTTG 210
||||||| | ||| | ||||||||| | |||||||||||||||||||||||||||||
Sbjct 295 CAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG 354
Query 211 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTCCTGGA 270
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 355 CAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGA 414
Query 271 GTAGGTGTGATCCCTCACATCCACTA 296
| | ||||||||||||||||||||||
Sbjct 415 GGAAGTGTGATCCCTCACATCCACTA 440
> AT4G04408.1 | Symbols: | pseudogene, similar to Putative histone
H2A, blastp match of 79% identity and 3.0e-31 P-value to
GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza
sativa (japonica cultivar-group)} | chr4:2184059-2184400
REVERSE LENGTH=342
Length=342
Score = 326 bits (176), Expect = 9e-89
Identities = 236/266 (89%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 31 TTTCCAGTGGTTCGTATTCATAGGCAACTCAAGACCAGAGTTTCTGCATATGGTAGAGTT 90
|||||||||| ||||||||| | |||||| |||||||||||||||||| |||||| |||
Sbjct 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120
Query 91 GGTGCCACTTCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 150
||||| ||| || |||||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180
Query 151 GAGTTGGCTGGCAACGCGAGCAAAGATCTGGAAGTGAAGAGGATAACTCCAAGGCATTTG 210
||||||| | ||| | | ||| ||| || |||||||||||||||||||||||||||||
Sbjct 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240
Query 211 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTCCTGGA 270
||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300
Query 271 GTAGGTGTGATCCCTCACATCCACTA 296
| ||||||||||||||||||||||||
Sbjct 301 GGAGGTGTGATCCCTCACATCCACTA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13723095477
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5