BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891035

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13575.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  93.5    2e-18


> AT4G13575.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7892320-7893705 
REVERSE LENGTH=732
Length=732

 Score = 93.5 bits (50),  Expect = 2e-18
 Identities = 58/62 (94%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  305  AAAGAGGCAACAACTTCTCTGATCCATTGTTGAAGATCGATGAGGCAGAATCCAAAGGCG  364
            ||||||||||| |||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct  36   AAAGAGGCAACGACTTCTCTGATCCATTGTTGAAGATCGAAGAAGCAGAATCCGAAGGCG  95

Query  365  AG  366
            ||
Sbjct  96   AG  97



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5