BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891036
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885... 311 4e-84
AT4G04408.1 | Symbols: | pseudogene, similar to Putative histo... 311 4e-84
> AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982
FORWARD LENGTH=759
Length=759
Score = 311 bits (168), Expect = 4e-84
Identities = 216/240 (90%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 162 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTCGTGCCACTGCTGATGTCTACACGGC 221
||| |||| |||||||||||||||| |||| ||| |||| |||| || |||||||| | |
Sbjct 201 ACTTAAGAACAGAGTTTCTGCACATAGTAGTGTTGGTGCGACTGATGTTGTCTACATGAC 260
Query 222 TTCAATCCTTGAATACATAACTACAAAGGTTCTTGAGTTGGCTGGAAACACGAGCAAAGA 281
|||||||||||||||| |||||||| |||||||| ||||||| | |||||| ||||||||
Sbjct 261 TTCAATCCTTGAATACCTAACTACAGAGGTTCTTCAGTTGGCCGAAAACACTAGCAAAGA 320
Query 282 TCTGGAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAGGA 341
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 321 TTTAAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAAGA 380
Query 342 GCTTGACACACTCATCAAAGGAACAATTGCTGGAGTAGGTGTGATCCCTCACATCCACTA 401
|||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 381 GCTTGACACACTCATCAAAGGAACAATTATTGGAGGAAGTGTGATCCCTCACATCCACTA 440
> AT4G04408.1 | Symbols: | pseudogene, similar to Putative histone
H2A, blastp match of 79% identity and 3.0e-31 P-value to
GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza
sativa (japonica cultivar-group)} | chr4:2184059-2184400
REVERSE LENGTH=342
Length=342
Score = 311 bits (168), Expect = 4e-84
Identities = 216/240 (90%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 162 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTCGTGCCACTGCTGATGTCTACACGGC 221
||| ||||||||||||||||||||||||| ||| |||| |||| || |||||||||| |
Sbjct 87 ACTTAAGACCAGAGTTTCTGCACATGGTACTGTTGGTGCGACTGATGTTGTCTACACGAC 146
Query 222 TTCAATCCTTGAATACATAACTACAAAGGTTCTTGAGTTGGCTGGAAACACGAGCAAAGA 281
|||||||||||||| | ||||||| |||||||| ||||||| | |||||| | ||| ||
Sbjct 147 TTCAATCCTTGAATGCCTAACTACTGAGGTTCTTCAGTTGGCCGAAAACACTAACAAGGA 206
Query 282 TCTGGAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAGGA 341
| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 207 TTTGAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGGTTAGAGGAGATGAGGA 266
Query 342 GCTTGACACACTCATCAAAGGAACAATTGCTGGAGTAGGTGTGATCCCTCACATCCACTA 401
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 267 GCTTGACACACTCATCAAAGGAACAATTGTTGGAGGAGGTGTGATCCCTCACATCCACTA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001209122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5