BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891038

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43870.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   141    2e-33
  AT3G44210.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   139    8e-33
  AT1G35790.1 | Symbols:  | transposable element gene | chr1:1329...  75.0    2e-13


> AT3G43870.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G44210.1); 
Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15728176-15729150 
FORWARD LENGTH=564
Length=564

 Score =  141 bits (76),  Expect = 2e-33
 Identities = 89/95 (94%), Gaps = 2/95 (2%)
 Strand=Plus/Plus

Query  3    GGCTGAAGAGCCCAGAATGGAAGTGTCTGAGCCACGAGGGCCAGCCTCCA-CTCAGGAGG  61
            |||||| |||||| |||||| ||||||||||||||||||||||||||||| || | ||||
Sbjct  402  GGCTGACGAGCCCGGAATGGGAGTGTCTGAGCCACGAGGGCCAGCCTCCACCT-ATGAGG  460

Query  62   TTCTAGTCGTCACGAGGATGACTGGACCTAACGAT  96
            |||||||||||||||||||||||||||||||||||
Sbjct  461  TTCTAGTCGTCACGAGGATGACTGGACCTAACGAT  495


> AT3G44210.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G43870.1); 
Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15916270-15917332 
FORWARD LENGTH=432
Length=432

 Score =  139 bits (75),  Expect = 8e-33
 Identities = 90/97 (93%), Gaps = 2/97 (2%)
 Strand=Plus/Plus

Query  3    GGCTGA-AGAGCCCAGAATGGAAGTGTCTGAGCCACGAGGGCCAGCCTCCACTCAGGAGG  61
            |||||| | |||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct  294  GGCTGACA-AGCCCAGAATGGGAGTGTCTGAGCCACGAGGGCCAGCCTCCACTTATGAGG  352

Query  62   TTCTAGTCGTCACGAGGATGACTGGACCTAACGATAA  98
            ||||||| ||||||||||||||||||||| |||||||
Sbjct  353  TTCTAGTTGTCACGAGGATGACTGGACCTTACGATAA  389


> AT1G35790.1 | Symbols:  | transposable element gene | chr1:13295190-13300109 
REVERSE LENGTH=4920
Length=4920

 Score = 75.0 bits (40),  Expect = 2e-13
 Identities = 47/50 (94%), Gaps = 2/50 (4%)
 Strand=Plus/Minus

Query  48    CTCCA-CTCAGGAGGTTCTAGTCGTCACGAGGATGACTGGACCTAACGAT  96
             ||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct  1352  CTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGACCTAACGAT  1304



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8953640478


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5