BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891043

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10320.1 | Symbols:  | unknown protein; Has 54 Blast hits to...   110    1e-23


> AT5G10320.1 | Symbols:  | unknown protein; Has 54 Blast hits 
to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa 
- 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:3243956-3246720 REVERSE 
LENGTH=1553
Length=1553

 Score =  110 bits (59),  Expect = 1e-23
 Identities = 74/81 (91%), Gaps = 2/81 (2%)
 Strand=Plus/Plus

Query  218  ATGCTGAATCATGAGTTTTGTTTGACACTAACT-CGTTGAAACCGCTTGGAGATCTGCTT  276
            ||||||||||| ||||| ||||||| ||||| | ||||||| ||||||||||||||||||
Sbjct  713  ATGCTGAATCACGAGTTCTGTTTGAAACTAA-TCCGTTGAAGCCGCTTGGAGATCTGCTT  771

Query  277  GAACGTGAGGGCCTTTTGACA  297
            |||||||||| ||||||||||
Sbjct  772  GAACGTGAGGCCCTTTTGACA  792



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5