BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg891045 Length=267 Score E Sequences producing significant alignments: (Bits) Value AT4G04408.1 | Symbols: | pseudogene, similar to Putative histo... 333 5e-91 AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885... 327 2e-89 > AT4G04408.1 | Symbols: | pseudogene, similar to Putative histone H2A, blastp match of 79% identity and 3.0e-31 P-value to GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza sativa (japonica cultivar-group)} | chr4:2184059-2184400 REVERSE LENGTH=342 Length=342 Score = 333 bits (180), Expect = 5e-91 Identities = 239/268 (89%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 1 TTTCCAGTGGGTCGTATTCACAGGCAAGTCAAGACCATAGTTTCTGCACATGGTAGAGTT 60 |||||||||| ||||||||||| |||| | ||||||| ||||||||||||||||| ||| Sbjct 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120 Query 61 GGTGCCACT-ACTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCT 119 ||||| ||| | || |||||||||| ||||||||||||||| ||||||||| ||||||| Sbjct 121 GGTGCGACTGA-TGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCT 179 Query 120 TGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAACTGAAGAGGATAACTCCAAGGCATTT 179 | ||||||| | |||| | | ||| ||| ||||| ||||||||||||||||||||||||| Sbjct 180 TCAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTT 239 Query 180 GCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGG 239 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 240 GCAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGG 299 Query 240 AGGAGGTGTGATCCCTCACACCCAGTAG 267 |||||||||||||||||||| ||| ||| Sbjct 300 AGGAGGTGTGATCCCTCACATCCACTAG 327 > AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982 FORWARD LENGTH=759 Length=759 Score = 327 bits (177), Expect = 2e-89 Identities = 238/268 (89%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 1 TTTCCAGTGGGTCGTATTCACAGGCAAGTCAAGACCATAGTTTCTGCACATGGTAGAGTT 60 |||| ||||| ||||||||||| |||| | |||| || ||||||||||||| |||| ||| Sbjct 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234 Query 61 GGTGCCACT-ACTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCT 119 ||||| ||| | || |||||||| | |||||||||||||||||||||||||| ||||||| Sbjct 235 GGTGCGACTGA-TGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCT 293 Query 120 TGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAACTGAAGAGGATAACTCCAAGGCATTT 179 | ||||||| | |||| | ||||||||| | ||| ||||||||||||||||||||||||| Sbjct 294 TCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTT 353 Query 180 GCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGG 239 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 354 GCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGG 413 Query 240 AGGAGGTGTGATCCCTCACACCCAGTAG 267 |||| ||||||||||||||| ||| ||| Sbjct 414 AGGAAGTGTGATCCCTCACATCCACTAG 441 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12215063007 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5