BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891049

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   169    3e-41


> AT5G37590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr5:14927313-14932787 REVERSE LENGTH=1824
Length=1824

 Score =  169 bits (91),  Expect = 3e-41
 Identities = 115/126 (91%), Gaps = 4/126 (3%)
 Strand=Plus/Plus

Query  12   CAATCCTATTGTGTTTTCTGGGAACACTGTATTGGTAGTGGATGAGTCTAAT-AAGTCAA  70
            ||||||  ||| ||||| ||||||||||||||||| || |||||||||| || ||||| |
Sbjct  290  CAATCC--TTGGGTTTTGTGGGAACACTGTATTGGCAGAGGATGAGTCT-ATGAAGTCGA  346

Query  71   AATCTGGAGATAATATGGATGAGAGTGGCAATAGTGGGCTAGAAAAAATTGAGGACGGTT  130
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  347  AATCTGGAGATAATATGGATGAGAGTGGCAATACTGGGCTAGAAAAAATTGAGGACGGGT  406

Query  131  CGGTTG  136
            ||||||
Sbjct  407  CGGTTG  412


 Score =  158 bits (85),  Expect = 6e-38
 Identities = 99/106 (93%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  136  GGGAAACTGGAGCCGGCTGAGAGGCTTTTCGGTTCGGTAAAACAGGAAGCTAAGGAAGGT  195
            |||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct  478  GGGAAACTCGAGCCGGCTGAGAGACTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGT  537

Query  196  TTTGGAGAGAAGGATCCACATGTTGCCCCTGCATGTAACAATCTGG  241
            ||||||||||||||||||||||||||  ||||||| ||||||||||
Sbjct  538  TTTGGAGAGAAGGATCCACATGTTGCATCTGCATGCAACAATCTGG  583


 Score =  119 bits (64),  Expect = 3e-26
 Identities = 90/101 (89%), Gaps = 7/101 (7%)
 Strand=Plus/Plus

Query  364  TATATAGAGTCAAGAAAGAATTCGACAAAGCAGAGCCCTTATACGTTATACCTAGAAGTT  423
            ||||||||||||||||||||||||||||||||||||| || ||  | |  |||||||| |
Sbjct  590  TATATAGAGTCAAGAAAGAATTCGACAAAGCAGAGCC-TT-TA--T-A--CCTAGAAGCT  642

Query  424  GTTAGTATCTTGGAGGATTTCTATGGTCCTGAAGATGTGCG  464
            ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct  643  GTTAGTATCTTGGAGGAGTTCTACGGTCCTGACGATGTGCG  683



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5