BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891052

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885...   145    3e-34
  AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance trans...   113    7e-25


> AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885982 
FORWARD LENGTH=759
Length=759

 Score =  145 bits (78),  Expect = 3e-34
 Identities = 101/112 (90%), Gaps = 2/112 (2%)
 Strand=Plus/Minus

Query  134  GTTTTAAGGAGCCACATGGATTGCATGTCATTGTGAATTGTATAGCACTC-CACCTCTAG  192
            |||||||||||||||||||| ||||| ||| |||||||||| |||||| |  | ||||||
Sbjct  690  GTTTTAAGGAGCCACATGGAATGCATATCACTGTGAATTGTTTAGCAC-CAAAACTCTAG  632

Query  193  GAGCAAAGGACTTCTCCTATCATCTACGAGATGAGACGTAAAATTATGATGT  244
            |||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct  631  GAGCAAAGAACTTCTCCTATCGTTTACGAGATGAGACGTAAAATTATGATGT  580


> AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance transporter)-like 
transporter 3 | chr5:3931562-3935129 FORWARD 
LENGTH=1614
Length=1614

 Score =  113 bits (61),  Expect = 7e-25
 Identities = 67/70 (96%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  22   AGGAGATATAGCGTAAACCAAATACTCGGATGCACTCTTGTAGCTCTCGTTGTAATCGGC  81
            |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct  754  AGGAGATATAGCGTAAACCAAATACTCGGATGTACTCTTGTAGCTCTCGGTGTAATCGTC  813

Query  82   AGTGTGGCAA  91
            ||||||||||
Sbjct  814  AGTGTGGCAA  823



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5