BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891062

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14910.2 | Symbols: HISN5B | HISTIDINE BIOSYNTHESIS 5B | chr...   649    0.0  


> AT4G14910.2 | Symbols: HISN5B | HISTIDINE BIOSYNTHESIS 5B | chr4:8528167-8530114 
REVERSE LENGTH=1276
Length=1276

 Score =  649 bits (351),  Expect = 0.0
 Identities = 415/446 (93%), Gaps = 4/446 (1%)
 Strand=Plus/Plus

Query  1    CAACTTGCTTCACATGGATTGTTCCATGTACATGTAAGAGCTACTGGTG-GCCTTCACAT  59
            ||||||||||||||||| |||||| ||||||| ||||||||||||||||   | ||||||
Sbjct  355  CAACTTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATAC-TCACAT  413

Query  60   TGATGATCATCATACTAATGAAGATGTTGCTCTTGCTATTGGTACAGCTTTGTTAAAGGC  119
            |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct  414  TGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGCTTTGTTAAAGGC  473

Query  120  ACTTGGTGAGCGGAAAGGGATTAACCGTTTTGGCAATTTTACAGCTCCTCTTGATGAAGC  179
            |||||| || |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct  474  ACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGC  533

Query  180  ACTCATACGTGTGTCCCTG-ATCTATCTGGTAGACCATATCTTGGCTACAAACTTAGAGA  238
            |||||||| ||| |||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct  534  ACTCATACATGTTTCCCTGGATCTATCTGGTAGACCATATCTTGGATACAA-CTTAGAGA  592

Query  239  TTCCAACCCAGAGAGTAGGAACATACGACACACAGTTGGTGGAGCATTTCTTCCAGTCTT  298
            ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |
Sbjct  593  TTCCAACGCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAACACTTCTTCCAGTCAT  652

Query  299  TGGTGAATACTTCTGGTATGACACTTCACACCCGACAGCTTGCCGGTAAAAACTCTCATC  358
            |||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||
Sbjct  653  TGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGCTTGCTGGTAAAAACTCGCATC  712

Query  359  ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTG  418
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  713  ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACAAGCAACAGAGTCTG  772

Query  419  ATCCACGTCGCGGTGGAACAATACCA  444
            ||||||| |||||||| |||||||||
Sbjct  773  ATCCACGCCGCGGTGGGACAATACCA  798



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5