BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891063

Length=1053
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14920.1 | Symbols:  | Acyl-CoA N-acyltransferase with RING/...   407    1e-112


> AT4G14920.1 | Symbols:  | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type 
zinc finger protein | chr4:8531043-8535842 REVERSE 
LENGTH=3531
Length=3531

 Score =  407 bits (220),  Expect = 1e-112
 Identities = 280/309 (91%), Gaps = 4/309 (1%)
 Strand=Plus/Plus

Query  747   ATTTCATGGTAACCGCT-TAGCTGAGATGCAGTTCATTGGAACTCGGCATGTCTACAGAC  805
             ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct  2679  ATTTCATGGTAACCG-TCTAGCTGAGATGCCGTTCATTGGAACTCGGCATGTCTACAGAC  2737

Query  806   ACCAAGGGATGTGCCGCCGGCTTTTCAGCGTTGTTGAATCAACTCTTCAAAATCTCAAAG  865
             |||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||||
Sbjct  2738  ACCAAGGGATGTGCCGGCGGCTTTTCAGCGTAGTTGAATCAGCTCTTCAACATCTCAAAG  2797

Query  866   TTGAATTACTTGTTATCCCTGCAACTGCTGACTTAAGCCATGTTTGGATATCCAAATTCG  925
             |  |||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  2798  TCAAATTACTAATTATCCCTGCAACTGCCGACTTTAGCCATGTTTGGATATCCAAATTCG  2857

Query  926   GGTTTAAATATGTCGAGGATTCTCTGAAGAAAGAATTGCGGTCCATGAATCTACTAGCCT  985
             |||||  | | |||||||||||||||||||||||| |||||||||||||||| ||| |||
Sbjct  2858  GGTTTCGACAAGTCGAGGATTCTCTGAAGAAAGAAATGCGGTCCATGAATCTGCTAACCT  2917

Query  986   TTCCTGGTATTGATGTGTTACAGAAAGAACTGCTAGCACCAAGACATGCCAAGTCTGCTG  1045
             | ||||| |||||||||||||||||||| ||| |||||||| ||||| || |||||||||
Sbjct  2918  TCCCTGGCATTGATGTGTTACAGAAAGAGCTGTTAGCACCACGACATACCGAGTCTGCTG  2977

Query  1046  -CTGACACA  1053
              | ||||||
Sbjct  2978  TC-GACACA  2985


 Score =  106 bits (57),  Expect = 5e-22
 Identities = 74/82 (90%), Gaps = 2/82 (2%)
 Strand=Plus/Plus

Query  430   ATGTTTCCTCATGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAGGGCAGTT  489
             |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  2146  ATGTTTCCTCTTGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAAGGCAGTT  2205

Query  490   GTCGAAGAATGT-AGTCAAACT  510
              | ||||| ||| | ||| |||
Sbjct  2206  ATTGAAGA-TGTTACTCAGACT  2226



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51640703116


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5