BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891066

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12650.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   329    1e-89


> AT3G12650.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 15 growth stages; Has 31 Blast hits 
to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:4017830-4018631 REVERSE 
LENGTH=802
Length=802

 Score =  329 bits (178),  Expect = 1e-89
 Identities = 235/262 (90%), Gaps = 5/262 (2%)
 Strand=Plus/Plus

Query  159  GAAGAAGACAGAGGAGT-TAACGCCAGAGGAGC--C-GAAGATGAAGCACCAGGAGATCG  214
            ||||||| ||||||| |  || |  ||||||||  | |||||||||||||||||||||||
Sbjct  274  GAAGAAGCCAGAGGAATCGAA-GGAAGAGGAGCTGCAGAAGATGAAGCACCAGGAGATCG  332

Query  215  ATGGCCCGACTGTGGAACGCGATTTGTCGGCGCTAGGAAATGAGACGAGACAAGTGTTGG  274
            | || || |||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct  333  AAGGACCAACTGTGGAACGCGATTTGTCAGCGTTAGGAAATGAGACGAGACAAGTGTTGG  392

Query  275  AAGGGATGATGAAGAATATGTACAGTCTAAGTGGAGCTATGGGTGCTCTGGGTTTAACTC  334
            |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct  393  AAGGGATGATGAAGAATATGTATAGTCTAAGTGGAGCTATGGGTGCTTTGGGTTTAACTC  452

Query  335  AACTGATTGTAGGAGCGACGATTTTGTACGCGACTAGATCAGATCCGATGAAGGAAATGA  394
            || ||||| | |||||| ||||||| ||||| ||| || |||||||||||||||||||||
Sbjct  453  AATTGATTCTTGGAGCGGCGATTTTATACGCCACTCGAGCAGATCCGATGAAGGAAATGA  512

Query  395  CAATCCAGAGCTGTATTGCTTT  416
            |||| ||||||||||| |||||
Sbjct  513  CAATTCAGAGCTGTATAGCTTT  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5