BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891067

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44820.2 | Symbols:  | unknown protein; Has 70 Blast hits to...   488    2e-137


> AT2G44820.2 | Symbols:  | unknown protein; Has 70 Blast hits 
to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa 
- 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes 
- 10 (source: NCBI BLink). | chr2:18484351-18485816 FORWARD 
LENGTH=1032
Length=1032

 Score =  488 bits (264),  Expect = 2e-137
 Identities = 396/458 (86%), Gaps = 15/458 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGAAGAAAAAGGAAGGCATGGG--GT-CTATTGACCAAGACCTCAGCTTTAGGAAG  57
            ||||||||||||||||||||||||||   | ||||||| ||| |||| ||||||| ||| 
Sbjct  170  ATGGAGAAGAAAAAGGAAGGCATGGGTTCTACTATTGATCAAAACCTGAGCTTTAAGAAT  229

Query  58   ATTATGAAAGATGTTGAACTCTTTGGTTCTTCACATATGACATGGAAAGATAAGAAAGCA  117
            |||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  230  ATTATGAAAGATGTTGCACTCTTTGGTTCTTCGCATATGACATGGAAGGATAAGAAAGCA  289

Query  118  TTGGAGAACAAGAAAGTGACTGCACTCGGTGGAAAGCCTCAAAAGAAT-CATGGGTTACC  176
             ||||| | ||||||||||||||||| ||||||||| | |||||| || ||| || ||||
Sbjct  290  CTGGAGGATAAGAAAGTGACTGCACTTGGTGGAAAGGCACAAAAG-ATGCATAGGCTACC  348

Query  177  TCTGAGTGTAGCACGAGTACAGATGAAGAAACAGAAAGATAGAGAAGAGAAAATGTTGGA  236
             ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct  349  GCTGAGTGTAGCTCGAGTGCAGATGAAGAAACAGAAAGATAGAGAAGAGAAGATGTTAGA  408

Query  237  ACAGAATATGATTCTTGGCAGATTTGGAGGACAATTTGGGAGTGGAAGTACGAGGAAACC  296
            ||||||| ||||||||||||||||||| ||    |  || ||| | |||| | | |||||
Sbjct  409  ACAGAATGTGATTCTTGGCAGATTTGGTGGGGG-T--GGAAGTAGCAGTA-G-G-AAACC  462

Query  297  CGCAGAGAGGAAGCGTACGCTAGAAGAGAGAGTCTTGAAGTCAACTGTAGGGCATTT-CA  355
            ||||||||| |||||||||| |||||||||||| ||||||||||||| |||| |||| ||
Sbjct  463  CGCAGAGAGAAAGCGTACGCCAGAAGAGAGAGTATTGAAGTCAACTGGAGGG-ATTTTCA  521

Query  356  AGGGCGGTGTTCTTGATGTTAGGCATATGCTACATTCTGGTTCTTCAAGAACTAATGACA  415
            | ||||||||||||||||||| |||| |||||| ||||||| ||||||| | || |||||
Sbjct  522  AAGGCGGTGTTCTTGATGTTAAGCATTTGCTACGTTCTGGTCCTTCAAGTAGTAGTGACA  581

Query  416  CATATTTCAAGATgaagaaacacagtaagag-cgagaa  452
             | ||||||||| |||||||| ||||| | | ||||||
Sbjct  582  GAGATTTCAAGACGAAGAAACCCAGTAGG-GTCGAGAA  618



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5