BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg891068

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13480.1 | Symbols: AtMYB79, MYB79 | myb domain protein 79 |...   558    1e-158


> AT4G13480.1 | Symbols: AtMYB79, MYB79 | myb domain protein 79 
| chr4:7836675-7837684 FORWARD LENGTH=817
Length=817

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 425/484 (88%), Gaps = 9/484 (2%)
 Strand=Plus/Plus

Query  1    CCCATTTCAAGAAAAAAGGCAAAGCC-AGCAACTAACAATGTGGAGAAGACAAAGAATCG  59
            ||||||||||| |||||||||||||| | | |||||||||| |||||||| ||||| |||
Sbjct  311  CCCATTTCAAG-AAAAAGGCAAAGCCTA-CGACTAACAATGCGGAGAAGATAAAGAGTCG  368

Query  60   TCTCTTAAAGAGGCAACAGTTCAAGCAACTTAGAGAAATGGAGTTGCAACAAGAACAACA  119
            |||| |||| |||||||| |||||| |||  |||||||| ||||||||||||||||| ||
Sbjct  369  TCTCCTAAAAAGGCAACACTTCAAGGAACAGAGAGAAATAGAGTTGCAACAAGAACAGCA  428

Query  120  GTTGTGTCAGTTCGACCGACTCGATATGAAAAAGATCATGTCATTACTTGAAGATAGTAG  179
            ||||| ||||||||||| ||||| ||||||||||||||| || ||||| ||||| |  | 
Sbjct  429  GTTGTTTCAGTTCGACCAACTCGGTATGAAAAAGATCATCTCTTTACTCGAAGAAAACAA  488

Query  180  TAGCAGCAACAACAGTGATGGCGGCGGTGCCGGTGATGTGTTTTATGCTCCTCATCAAAT  239
            |||||| | ||  || |||   ||||||   ||||||||||| |||  |||| |||||||
Sbjct  489  TAGCAGTAGCAGTAGCGAT---GGCGGT---GGTGATGTGTTCTATTATCCTGATCAAAT  542

Query  240  AATACATTCATCAAAACCCTTTGGATATAACCCTAATTCGTTAGAGGAGCAGTTACAAGG  299
            || ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct  543  AACACATTCATCAAAACCCTTTGGCTATAACTCTAATTCATTAGAGGAGCAGTTACAAGG  602

Query  300  TATATTAACGCCGGTAAATATACCTGAAACTAATACTATGAACCAAGACAATGCGATATG  359
            || |||  | || ||||| ||||||||  |||||||||||||| |||||||||| |||||
Sbjct  603  TAGATTTTCTCCTGTAAACATACCTGATGCTAATACTATGAACGAAGACAATGCCATATG  662

Query  360  GGACGGGTTTTGGAACATGGATGTTGTGGATGGACATGGTGGGAACTTGGATGTTGTGGC  419
            |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||
Sbjct  663  GGACGGGTTTTGGAACATGGATGTTGTAAATGGACATGGTGGGAACTTGGGTGTTGTGGC  722

Query  420  TGCTACTGCTGCTTGTGGCCCAAGGAAGCCTTATTTCCATAACTTGGTTATTCCATTTTG  479
            |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  723  TGCTACTGCTGCTTGTGGCCCAAGGAAGCCCTATTTCCATAACTTGGTGATTCCATTTTG  782

Query  480  TTAA  483
            ||||
Sbjct  783  TTAA  786



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5