BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg891073
Length=177
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 200 3e-51
AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 178 2e-44
AT1G35790.1 | Symbols: | transposable element gene | chr1:1329... 80.5 4e-15
AT1G34315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 69.4 1e-11
> AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G44210.1);
Has 18 Blast hits to 18 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15728176-15729150
FORWARD LENGTH=564
Length=564
Score = 200 bits (108), Expect = 3e-51
Identities = 125/133 (94%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1 ATGGACCGACGGGTTAACAGCTGCTCAAGAACAGTTGACGAGCCCGGAATGGGAGTGTCT 60
||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 370 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 429
Query 61 GAGCCACGAGGGCCACCCTCCA-CTCAGGAGGTTCTAGTCGTCACGAGGATGACTGGACC 119
||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||
Sbjct 430 GAGCCACGAGGGCCAGCCTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGACC 488
Query 120 TAACGATGTATAT 132
||||||||| |||
Sbjct 489 TAACGATGTGTAT 501
> AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G43870.1);
Has 15 Blast hits to 15 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15916270-15917332
FORWARD LENGTH=432
Length=432
Score = 178 bits (96), Expect = 2e-44
Identities = 116/126 (92%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1 ATGGACCGACGGGTTAACAGCTGCTCAAGAACAGTTGACGAGCCCGGAATGGGAGTGTCT 60
||||||||||||||||||||||| |||||||| | |||| ||||| ||||||||||||||
Sbjct 262 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACAAGCCCAGAATGGGAGTGTCT 321
Query 61 GAGCCACGAGGGCCACCCTCCACTCAGGAGGTTCTAGTCGTCACGAGGATGACTGGACCT 120
||||||||||||||| |||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 322 GAGCCACGAGGGCCAGCCTCCACTTATGAGGTTCTAGTTGTCACGAGGATGACTGGACCT 381
Query 121 AACGAT 126
|||||
Sbjct 382 TACGAT 387
> AT1G35790.1 | Symbols: | transposable element gene | chr1:13295190-13300109
REVERSE LENGTH=4920
Length=4920
Score = 80.5 bits (43), Expect = 4e-15
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Minus
Query 78 CTCCA-CTCAGGAGGTTCTAGTCGTCACGAGGATGACTGGACCTAACGATGTATAT 132
||||| || | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1352 CTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGACCTAACGATGTGTAT 1298
> AT1G34315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G31400.1); Has
4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:12514106-12516521
REVERSE LENGTH=819
Length=819
Score = 69.4 bits (37), Expect = 1e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 90 GGTTCTAGTCGTCACGAGGATGACTGGACCTAACGATGTATAT 132
||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 423 GGTTCTAGTTGTCACGAGGATGACTGGACCTAACGATGTGTAT 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7746408054
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5